Gene Expression Signatures of Radiation Response Are Specific, Durable and Accurate in Mice and Humans

被引:90
作者
Meadows, Sarah K. [1 ]
Dressman, Holly K. [2 ,3 ]
Muramoto, Garrett G. [1 ]
Himburg, Heather [1 ]
Salter, Alice [1 ]
Wei, ZhengZheng [2 ]
Ginsburg, Geoff [3 ]
Chao, Nelson J. [1 ]
Nevins, Joseph R. [2 ,3 ]
Chute, John P. [1 ,3 ]
机构
[1] Duke Univ, Med Ctr, Div Cell Therapy, Durham, NC 27706 USA
[2] Duke Univ, Med Ctr, Dept Mol Genet & Microbiol, Durham, NC USA
[3] Duke Univ, Med Ctr, Inst Genome Sci & Policy, Durham, NC USA
来源
PLOS ONE | 2008年 / 3卷 / 04期
关键词
D O I
10.1371/journal.pone.0001912
中图分类号
O [数理科学和化学]; P [天文学、地球科学]; Q [生物科学]; N [自然科学总论];
学科分类号
07 ; 0710 ; 09 ;
摘要
Background: Previous work has demonstrated the potential for peripheral blood (PB) gene expression profiling for the detection of disease or environmental exposures. Methods and Findings: We have sought to determine the impact of several variables on the PB gene expression profile of an environmental exposure, ionizing radiation, and to determine the specificity of the PB signature of radiation versus other genotoxic stresses. Neither genotype differences nor the time of PB sampling caused any lessening of the accuracy of PB signatures to predict radiation exposure, but sex difference did influence the accuracy of the prediction of radiation exposure at the lowest level (50 cGy). A PB signature of sepsis was also generated and both the PB signature of radiation and the PB signature of sepsis were found to be 100% specific at distinguishing irradiated from septic animals. We also identified human PB signatures of radiation exposure and chemotherapy treatment which distinguished irradiated patients and chemotherapy-treated individuals within a heterogeneous population with accuracies of 90% and 81%, respectively. Conclusions: We conclude that PB gene expression profiles can be identified in mice and humans that are accurate in predicting medical conditions, are specific to each condition and remain highly accurate over time.
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页数:9
相关论文
共 45 条
[1]   Distinct types of diffuse large B-cell lymphoma identified by gene expression profiling [J].
Alizadeh, AA ;
Eisen, MB ;
Davis, RE ;
Ma, C ;
Lossos, IS ;
Rosenwald, A ;
Boldrick, JG ;
Sabet, H ;
Tran, T ;
Yu, X ;
Powell, JI ;
Yang, LM ;
Marti, GE ;
Moore, T ;
Hudson, J ;
Lu, LS ;
Lewis, DB ;
Tibshirani, R ;
Sherlock, G ;
Chan, WC ;
Greiner, TC ;
Weisenburger, DD ;
Armitage, JO ;
Warnke, R ;
Levy, R ;
Wilson, W ;
Grever, MR ;
Byrd, JC ;
Botstein, D ;
Brown, PO ;
Staudt, LM .
NATURE, 2000, 403 (6769) :503-511
[2]  
Amundson SA, 2000, RADIAT RES, V154, P342, DOI 10.1667/0033-7587(2000)154[0342:IOPMBI]2.0.CO
[3]  
2
[4]   Human in vivo radiation-induced biomarkers:: Gene expression changes in radiotherapy patients [J].
Amundson, SA ;
Grace, MB ;
McLeland, CB ;
Epperly, MW ;
Yeager, A ;
Zhan, QM ;
Greenberger, JS ;
Fornace, AJ .
CANCER RESEARCH, 2004, 64 (18) :6368-6371
[5]  
Amundson SA, 2001, RADIAT RES, V156, P657, DOI 10.1667/0033-7587(2001)156[0657:IOGEAA]2.0.CO
[6]  
2
[7]   Blood Genomics in human stroke [J].
Baird, Alison E. .
STROKE, 2007, 38 (02) :694-698
[8]   Stereotyped and specific gene expression programs in human innate immune responses to bacteria [J].
Boldrick, JC ;
Alizadeh, AA ;
Diehn, M ;
Dudoit, S ;
Liu, CL ;
Belcher, CE ;
Botstein, D ;
Staudt, LM ;
Brown, PO ;
Relman, DA .
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 2002, 99 (02) :972-977
[9]   Colorectal screening after polypectomy: A national survey study of primary care physicians [J].
Boolchand, Vikram ;
Olds, Gregory ;
Singh, Joseph ;
Singh, Pankaj ;
Chak, Amitabh ;
Cooper, Gregory S. .
ANNALS OF INTERNAL MEDICINE, 2006, 145 (09) :654-659
[10]   Genomic prediction of locoregional recurrence after mastectomy in breast cancer [J].
Cheng, Skye H. ;
Horng, Cheng-Fang ;
West, Mike ;
Huang, Erich ;
Pittman, Jennifer ;
Tsou, Mei-Hua ;
Dressman, Holly ;
Chen, Chii-Ming ;
Tsai, Stella Y. ;
Jian, James J. ;
Liu, Mei-Chin ;
Nevins, Joseph R. ;
Huang, Andrew T. .
JOURNAL OF CLINICAL ONCOLOGY, 2006, 24 (28) :4594-4602