A census of human transcription factors: function, expression and evolution

被引:1127
作者
Vaquerizas, Juan M. [1 ]
Kummerfeld, Sarah K. [2 ]
Teichmann, Sarah A. [2 ]
Luscombe, Nicholas M. [1 ,3 ]
机构
[1] EMBL European Bioinformat Inst, Cambridge CB10 1SD, England
[2] MRC, Mol Biol Lab, Cambridge CB2 0QH, England
[3] EMBL Heidelberg Gene Express Unit, D-69117 Heidelberg, Germany
关键词
SERUM RESPONSE FACTOR; GENE-EXPRESSION; CELLULAR-METABOLISM; CRYSTAL-STRUCTURE; PERIPHERAL-BLOOD; FORKHEAD-DOMAIN; TARGET GENES; BINDING; PROTEIN; MOUSE;
D O I
10.1038/nrg2538
中图分类号
Q3 [遗传学];
学科分类号
071007 ; 090102 ;
摘要
Transcription factors are key cellular components that control gene expression: their activities determine how cells function and respond to the environment. Currently, there is great interest in research into human transcriptional regulation. However, surprisingly little is known about these regulators themselves. For example, how many transcription factors does the human genome contain? How are they expressed in different tissues? Are they evolutionarily conserved? Here, we present an analysis of 1,391 manually curated sequence-specific DNA-binding transcription factors, their functions, genomic organization and evolutionary conservation. Much remains to be explored, but this study provides a solid foundation for future investigations to elucidate regulatory mechanisms underlying diverse mammalian biological processes.
引用
收藏
页码:252 / 263
页数:12
相关论文
共 117 条
[1]   An insight into the phylogenetic history of HOX linked gene families in vertebrates [J].
Abbasi, Amir Ali ;
Grzeschik, Karl-Heinz .
BMC EVOLUTIONARY BIOLOGY, 2007, 7
[2]   FoxOs at the crossroads of cellular metabolism, differentiation, and transformation [J].
Accili, D ;
Arden, KC .
CELL, 2004, 117 (04) :421-426
[3]   FlyTF:: a systematic review of site-specific transcription factors in the fruit fly Drosophila melanogaster [J].
Adryan, Boris ;
Teichmann, Sarah A. .
BIOINFORMATICS, 2006, 22 (12) :1532-1533
[4]  
ALBAGLI O, 1994, ONCOGENE, V9, P3259
[5]   Neuronal migration in the murine rostral migratory stream requires serum response factor [J].
Alberti, S ;
Krause, SM ;
Kretz, O ;
Philippar, U ;
Lemberger, T ;
Casanova, E ;
Wiebel, FF ;
Schwarz, H ;
Frotscher, M ;
Schütz, G ;
Nordheim, A .
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 2005, 102 (17) :6148-6153
[6]   One billion years of bZIP transcription factor evolution: Conservation and change in dimerization and DNA-binding site specificity [J].
Amoutzias, G. D. ;
Veron, A. S. ;
Weiner, J., III ;
Robinson-Rechavi, M. ;
Bornberg-Bauer, E. ;
Oliver, S. G. ;
Robertson, D. L. .
MOLECULAR BIOLOGY AND EVOLUTION, 2007, 24 (03) :827-835
[7]   The evolution of cell types in animals: emerging principles from molecular studies [J].
Arendt, Detlev .
NATURE REVIEWS GENETICS, 2008, 9 (11) :868-882
[8]   Serum response factor is essential for mesoderm formation during mouse embryogenesis [J].
Arsenian, S ;
Weinhold, B ;
Oelgeschläger, M ;
Rüther, U ;
Nordheim, A .
EMBO JOURNAL, 1998, 17 (21) :6289-6299
[9]   Gene Ontology: tool for the unification of biology [J].
Ashburner, M ;
Ball, CA ;
Blake, JA ;
Botstein, D ;
Butler, H ;
Cherry, JM ;
Davis, AP ;
Dolinski, K ;
Dwight, SS ;
Eppig, JT ;
Harris, MA ;
Hill, DP ;
Issel-Tarver, L ;
Kasarskis, A ;
Lewis, S ;
Matese, JC ;
Richardson, JE ;
Ringwald, M ;
Rubin, GM ;
Sherlock, G .
NATURE GENETICS, 2000, 25 (01) :25-29
[10]   E2A PROTEINS ARE REQUIRED FOR PROPER B-CELL DEVELOPMENT AND INITIATION OF IMMUNOGLOBULIN GENE REARRANGEMENTS [J].
BAIN, G ;
MAANDAG, ECR ;
IZON, DJ ;
AMSEN, D ;
KRUISBEEK, AM ;
WEINTRAUB, BC ;
KROP, I ;
SCHLISSEL, MS ;
FEENEY, AJ ;
VANROON, M ;
VANDERVALK, M ;
TERIELE, HPJ ;
BERNS, A ;
MURRE, C .
CELL, 1994, 79 (05) :885-892