Genomic Insights into Marine Microalgae

被引:118
作者
Parker, Micaela S. [1 ]
Mock, Thomas [2 ]
Armbrust, E. Virginia [1 ]
机构
[1] Univ Washington, Sch Oceanog, Seattle, WA 98195 USA
[2] Univ E Anglia, Sch Environm Sci, Norwich NR4 7TJ, Norfolk, England
关键词
phytoplankton; evolution; eukaryote; EST; metabolism; gene transfer;
D O I
10.1146/annurev.genet.42.110807.091417
中图分类号
Q3 [遗传学];
学科分类号
071007 ; 090102 ;
摘要
Marine eukaryotic photosynthesis is dominated by a diverse group of unicellular organisms collectively called microalgae. Microalgae include cells derived from a primary endosymbiotic event (similar to land plants) and cells derived from subsequent secondary and/or tertiary endosymbiotic events. These latter cells are chimeras of several genomes and dominate primary production in the marine environment. Two consequences of multiple endosymbiotic events include complex targeting mechanisms to allow nuclear-encoded proteins to he imported into the plastid and coordination of enzymes, potentially from disparate originator cells, to form complete metabolic pathways. In this review, we discuss the forces that shaped the genomes of marine microalgae and then discuss some of the metabolic consequences of such a complex evolutionary history. We focus our metabolic discussion on carbon, nitrogen, and iron. We then discuss biomineralization and new evidence for programmed cell death in microalgae. We conclude with a short summary on advances in genetic manipulation of microalgae and thoughts on the future directions of marine algal genomics.
引用
收藏
页码:619 / 645
页数:27
相关论文
共 148 条
[1]   Whole-cell response of the pennate diatom Phaeodactylum tricornutum to iron starvation [J].
Allen, Andrew E. ;
LaRoche, Julie ;
Maheswari, Uma ;
Lommer, Markus ;
Schauer, Nicolas ;
Lopez, Pascal J. ;
Finazzi, Giovanni ;
Fernie, Alisclair R. ;
Bowler, Chris .
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 2008, 105 (30) :10438-10443
[2]   An ecological and evolutionary context for integrated nitrogen metabolism and related signaling pathways in marine diatoms [J].
Allen, Andrew E. ;
Vardi, Assaf ;
Bowler, Chris .
CURRENT OPINION IN PLANT BIOLOGY, 2006, 9 (03) :264-273
[3]   Free-radical-induced mutation vs redox regulation: Costs and benefits of genes in organelles [J].
Allen, JF ;
Raven, JA .
JOURNAL OF MOLECULAR EVOLUTION, 1996, 42 (05) :482-492
[4]   Lateral gene transfer in eukaryotes [J].
Andersson, JO .
CELLULAR AND MOLECULAR LIFE SCIENCES, 2005, 62 (11) :1182-1197
[5]   Evolution of glutamate dehydrogenase genes: evidence for lateral gene transfer within and between prokaryotes and eukaryotes [J].
Andersson, JO ;
Roger, AJ .
BMC EVOLUTIONARY BIOLOGY, 2003, 3 (1)
[6]  
Apt KE, 1996, MOL GEN GENET, V252, P572, DOI 10.1007/BF02172403
[7]   In vivo characterization of diatom multipartite plastid targeting signals [J].
Apt, KE ;
Zaslavkaia, L ;
Lippmeier, JC ;
Lang, M ;
Kilian, O ;
Wetherbee, R ;
Grossman, AR ;
Kroth, PG .
JOURNAL OF CELL SCIENCE, 2002, 115 (21) :4061-4069
[8]   Lateral gene transfer and the evolution of plastid-targeted proteins in the secondary plastid-containing alga Bigelowiella natans [J].
Archibald, JM ;
Rogers, MB ;
Toop, M ;
Ishida, K ;
Keeling, PJ .
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 2003, 100 (13) :7678-7683
[9]   The genome of the diatom Thalassiosira pseudonana:: Ecology, evolution, and metabolism [J].
Armbrust, EV ;
Berges, JA ;
Bowler, C ;
Green, BR ;
Martinez, D ;
Putnam, NH ;
Zhou, SG ;
Allen, AE ;
Apt, KE ;
Bechner, M ;
Brzezinski, MA ;
Chaal, BK ;
Chiovitti, A ;
Davis, AK ;
Demarest, MS ;
Detter, JC ;
Glavina, T ;
Goodstein, D ;
Hadi, MZ ;
Hellsten, U ;
Hildebrand, M ;
Jenkins, BD ;
Jurka, J ;
Kapitonov, VV ;
Kröger, N ;
Lau, WWY ;
Lane, TW ;
Larimer, FW ;
Lippmeier, JC ;
Lucas, S ;
Medina, M ;
Montsant, A ;
Obornik, M ;
Parker, MS ;
Palenik, B ;
Pazour, GJ ;
Richardson, PM ;
Rynearson, TA ;
Saito, MA ;
Schwartz, DC ;
Thamatrakoln, K ;
Valentin, K ;
Vardi, A ;
Wilkerson, FP ;
Rokhsar, DS .
SCIENCE, 2004, 306 (5693) :79-86
[10]   The future of the carbon cycle:: review, calcification response, ballast and feedback on atmospheric CO2 [J].
Barker, S ;
Higgins, JA ;
Elderfield, H .
PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY A-MATHEMATICAL PHYSICAL AND ENGINEERING SCIENCES, 2003, 361 (1810) :1977-1998