Strategies and tactics in multiscale modeling of cell-to-organ systems

被引:21
作者
Bassingthwaighte, JB [1 ]
Chizeck, HJ
Atlas, LE
机构
[1] Univ Washington, Dept Bioengn, Seattle, WA 98195 USA
[2] Univ Washington, Dept Elect Engn, Seattle, WA 98195 USA
关键词
adaptive model configuration; cardiac contraction; cardiac metabolic systems modeling; constraint-based analysis; data analysis; energetics; model aggregation; multicellular tissues; multiscale; optimization; oxidative phosphorylation;
D O I
10.1109/JPROC.2006.871775
中图分类号
TM [电工技术]; TN [电子技术、通信技术];
学科分类号
0808 ; 0809 ;
摘要
Modeling is essential to integrating knowledge of human physiology. Comprehensive self-consistent descriptions expressed in quantitative mathematical from define working hypotheses in testable and reproducible fibrin, and though such models are always "wrong" in it the sense of being incomplete or partly incorrect, they provide a means of understanding a system and improving that understanding. physiological systems, and models of them, encompass different levels of complexity. The lowest levels concern gene signaling and the regulation of transcription and translation, then biophysical and biochemical events at the protein level, and extend through the levels of cells, tissues and organs all the way to descriptions of integrated systems behavior. The highest levels, of organization represent the dynamically varying interactions of billions of cells. Models of such systems are necessarily simplified to minimize computation and to emphasize the key factors defining system behavior; different model forms are thus often used to represent a system in different ways. Each simplification of lower level complicated function reduces the range of accurate operability at the higher level model, reducing robustness, the ability to respond correctly to dynamic changes in conditions. When conditions change so that the complexity reduction has resulted in the solution departing from the range of validity, detecting the deviation is critical, and requires special methods to enforce adapting the model formulation to alternative reduced-from modules or decomposing the reduced-form aggregates to the more detailed lower level modules to maintain appropriate behavior. The processes of error recognition, and of mapping between different levels of model complexity and shifting the levels of complexity of models in response to changing conditions, are essential for adaptive modeling and computer simulation of large-scale systems in reasonable time.
引用
收藏
页码:819 / 831
页数:13
相关论文
共 76 条
[11]   Genetic control of biochemical reactions in neurospora [J].
Beadle, GW ;
Tatum, EL .
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 1941, 27 :499-506
[12]   The fractal nature of myocardial blood flow emerges from a whole-organ model of arterial network [J].
Beard, DA ;
Bassingthwaighte, JB .
JOURNAL OF VASCULAR RESEARCH, 2000, 37 (04) :282-296
[13]   Advection and diffusion of substances in biological tissues with complex vascular networks [J].
Beard, DA ;
Bassingthwaighte, JB .
ANNALS OF BIOMEDICAL ENGINEERING, 2000, 28 (03) :253-268
[14]   RECONSTRUCTION OF ACTION POTENTIAL OF VENTRICULAR MYOCARDIAL FIBERS [J].
BEELER, GW ;
REUTER, H .
JOURNAL OF PHYSIOLOGY-LONDON, 1977, 268 (01) :177-210
[15]   A DISCRETE-TIME MODEL OF ELECTRICALLY STIMULATED MUSCLE [J].
BERNOTAS, LA ;
CRAGO, PE ;
CHIZECK, HJ .
IEEE TRANSACTIONS ON BIOMEDICAL ENGINEERING, 1986, 33 (09) :829-838
[16]  
CALDWELL JH, 1990, J NUCL MED, V31, P99
[17]  
CALDWELL JH, 1994, AM J PHYSIOL-HEART C, V267, pH657
[18]   RECURSIVE PARAMETER-IDENTIFICATION OF CONSTRAINED SYSTEMS - AN APPLICATION TO ELECTRICALLY STIMULATED MUSCLE [J].
CHIA, TL ;
CHOW, PC ;
CHIZECK, HJ .
IEEE TRANSACTIONS ON BIOMEDICAL ENGINEERING, 1991, 38 (05) :429-442
[19]   ROBUST CLOSED-LOOP CONTROL OF ISOMETRIC MUSCLE FORCE USING PULSEWIDTH MODULATION [J].
CHIZECK, HJ ;
CRAGO, PE ;
KOFMAN, LS .
IEEE TRANSACTIONS ON BIOMEDICAL ENGINEERING, 1988, 35 (07) :510-517
[20]   Integrative science: a modeling challenge [J].
Coatrieux, JL .
IEEE ENGINEERING IN MEDICINE AND BIOLOGY MAGAZINE, 2004, 23 (01) :12-14