Genome-wide analysis of mRNAs regulated by the THO complex in Drosophila melanogaster

被引:174
作者
Rehwinkel, J [1 ]
Herold, A [1 ]
Gari, K [1 ]
Köcher, T [1 ]
Rode, M [1 ]
Ciccarelli, FL [1 ]
Wilm, M [1 ]
Izaurralde, E [1 ]
机构
[1] European Mol Biol Lab, D-69117 Heidelberg, Germany
关键词
D O I
10.1038/nsmb759
中图分类号
Q5 [生物化学]; Q7 [分子生物学];
学科分类号
071010 ; 081704 ;
摘要
In yeast cells, the THO complex has been implicated in mitotic recombination, transcription elongation and mRNA nuclear export. The stable core of THO consists of Tho2p, Hpr1p, Mft1p and Thp2p. Whether a complex with similar functions assembles in metazoa has not yet been established. Here we report that Drosophila melanogaster THO consists of THO2, HPR1 and three proteins, THOC5-THOC7, which have no orthologs in budding yeast. Gene expression profiling in cells depleted of THO components revealed that <20% of the transcriptome was regulated by THO. Nonetheless, export of heat-shock mRNAs under heat stress was strictly dependent on THO function. Notably, 8% of upregulated genes encode proteins involved in DNA repair. Thus, although THO function seems to be conserved, the vast majority of mRNAs are transcribed and exported independently of THO in D. melanogaster.
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页码:558 / 566
页数:9
相关论文
共 41 条
[1]   The connection between transcription and genomic instability [J].
Aguilera, A .
EMBO JOURNAL, 2002, 21 (03) :195-201
[2]   Gapped BLAST and PSI-BLAST: a new generation of protein database search programs [J].
Altschul, SF ;
Madden, TL ;
Schaffer, AA ;
Zhang, JH ;
Zhang, Z ;
Miller, W ;
Lipman, DJ .
NUCLEIC ACIDS RESEARCH, 1997, 25 (17) :3389-3402
[3]  
Chang MP, 1999, MOL CELL BIOL, V19, P1056
[4]   A protein complex containing Tho2, Hpr1, Mft1 and a novel protein, Thp2, connects transcription elongation with mitotic recombination in Saccharomyces cerevisiae [J].
Chávez, S ;
Beilharz, T ;
Rondón, AG ;
Erdjument-Bromage, H ;
Tempst, P ;
Svejstrup, JQ ;
Lithgow, T ;
Aguilera, A .
EMBO JOURNAL, 2000, 19 (21) :5824-5834
[5]   Hpr1 is preferentially required for transcription of either long or G+C-Rich DNA sequences in Saccharomyces cerevisiae [J].
Chávez, S ;
García-Rubio, M ;
Prado, F ;
Aguilera, A .
MOLECULAR AND CELLULAR BIOLOGY, 2001, 21 (20) :7054-7064
[6]  
Echalier G., 1997, Drosophila Cells in Culture
[7]   High-copy-number expression of Sub2p, a member of the RNA helicase superfamily, suppresses hpr1-mediated genomic instability [J].
Fan, HY ;
Merker, RJ ;
Klein, HL .
MOLECULAR AND CELLULAR BIOLOGY, 2001, 21 (16) :5459-5470
[8]   An efficient protein complex purification method for functional proteomics in higher eukaryotes [J].
Forler, D ;
Köcher, T ;
Rode, M ;
Gentzel, M ;
Izaurralde, E ;
Wilm, M .
NATURE BIOTECHNOLOGY, 2003, 21 (01) :89-92
[9]   β propellers:: structural rigidity and functional diversity [J].
Fülöp, V ;
Jones, DT .
CURRENT OPINION IN STRUCTURAL BIOLOGY, 1999, 9 (06) :715-721
[10]   REF1/Aly and the additional exon junction complex proteins are dispensable for nuclear mRNA export [J].
Gatfield, D ;
Izaurralde, E .
JOURNAL OF CELL BIOLOGY, 2002, 159 (04) :579-588