The electronic structure of the catalytic intermediate Ni-C in [NiFe] and [NiFeSe] hydrogenases

被引:49
作者
Stein, M [1 ]
Lubitz, W [1 ]
机构
[1] Tech Univ Berlin, Inst Chem, Max Volmer Lab Biophys Chem, D-10623 Berlin, Germany
关键词
D O I
10.1039/b105723p
中图分类号
O64 [物理化学(理论化学)、化学物理学];
学科分类号
070304 ; 081704 ;
摘要
The catalytic intermediate Ni-C in the heterolytic cleavage of molecular hydrogen is studied using relativistic DFT calculations. The difference between the [NiFe] and [NiFeSe] hydrogenases is investigated and it is found that structural modifications lead to changes in the electronic structure, manifested by g-values and hyperfine interactions. The sulfur to selenium substitution leads to small changes in the structural parameters and the spin density distribution. The g-tensor principal values are changed but the g-tensor orientation is retained in both enzymes. The hyperfine parameters show small but systematic changes. Participation of the terminal cysteine Cys530 in the reaction mechanism is discussed.
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收藏
页码:5115 / 5120
页数:6
相关论文
共 53 条
[21]  
2-6
[22]   Spectroscopic and model studies of the Ni-Fe hydrogenase reaction mechanism [J].
Maroney, MJ ;
Bryngelson, PA .
JOURNAL OF BIOLOGICAL INORGANIC CHEMISTRY, 2001, 6 (04) :453-459
[23]  
MARONEY MJ, 1998, STRUCT BOND, V92, P1
[24]   [NiFe] hydrogenase from Desulfovibrio desulfuricans ATCC 27774:: gene sequencing, three-dimensional structure determination and refinement at 1.8 Å and modelling studies of its interaction with the tetrahaem cytochrome c3 [J].
Matias, PM ;
Soares, CM ;
Saraiva, LM ;
Coelho, R ;
Morais, J ;
Le Gall, J ;
Carrondo, MA .
JOURNAL OF BIOLOGICAL INORGANIC CHEMISTRY, 2001, 6 (01) :63-81
[25]   UNAMBIGUOUS IDENTIFICATION OF THE NICKEL ELECTRON-PARAMAGNETIC-RES SIGNAL IN NI-61-ENRICHED DESULFOVIBRIO-GIGAS HYDROGENASE [J].
MOURA, JJG ;
MOURA, I ;
HUYNH, BH ;
KRUGER, HJ ;
TEIXEIRA, M ;
DUVARNEY, RC ;
DERVARTANIAN, DV ;
XAVIER, AV ;
PECK, HD ;
LEGALL, J .
BIOCHEMICAL AND BIOPHYSICAL RESEARCH COMMUNICATIONS, 1982, 108 (04) :1388-1393
[26]  
Neese F, 1998, J BIOL INORG CHEM, V3, P53
[27]   Theoretical characterization, of the reaction intermediates in a model of the nickel-iron hydrogenase of Desulfovibrio gigas [J].
Niu, SQ ;
Thomson, LM ;
Hall, MB .
JOURNAL OF THE AMERICAN CHEMICAL SOCIETY, 1999, 121 (16) :4000-4007
[28]  
Pavlov M, 1999, INT J QUANTUM CHEM, V73, P197, DOI 10.1002/(SICI)1097-461X(1999)73:2<197::AID-QUA13>3.0.CO
[29]  
2-R
[30]   Mechanism of H-H activation by nickel-iron hydrogenase [J].
Pavlov, M ;
Siegbahn, PEM ;
Blomberg, MRA ;
Crabtree, RH .
JOURNAL OF THE AMERICAN CHEMICAL SOCIETY, 1998, 120 (03) :548-555