An implementation of the conductor-like screening model of solvation within the Amsterdam density functional package

被引:1060
作者
Pye, CC [1 ]
Ziegler, T [1 ]
机构
[1] Univ Calgary, Dept Chem, Calgary, AB T2N 1N4, Canada
关键词
solvation; conductor-like screening model; Amsterdam density functional; oxepin; glycine;
D O I
10.1007/s002140050457
中图分类号
O64 [物理化学(理论化学)、化学物理学];
学科分类号
070304 ; 081704 ;
摘要
The conductor-lilte screening model (COSMO) of solvation has been implemented in the Amsterdam density functional program with maximum flexibility in mind. Four cavity definitions have been incorporated. Several iterative schemes have been tested for solving the COSMO equations. The biconjugate gradient method proves to be both robust and memory-conserving, The interaction between the surface charges and the electron density may be calculated by integrating over either the fitted or exact density, or by calculating the molecular potential. A disk-smearing algorithm is applied in the former case to avoid singularities. Several self-consistent field/COSMO coupling schemes were examined in an attempt to reduce computational effort. A gradient-preserving algorithm for removing outlying charge has been implemented. Preliminary optimized radii are given. Applications to the benzene oxide-oxepin valence tautomerization and to glycine conformation are presented.
引用
收藏
页码:396 / 408
页数:13
相关论文
共 29 条
[11]   SHAPE OF GLYCINE [J].
GODFREY, PD ;
BROWN, RD .
JOURNAL OF THE AMERICAN CHEMICAL SOCIETY, 1995, 117 (07) :2019-2023
[12]   WHAT IS THE ENERGY DIFFERENCE BETWEEN H2NCH2CO2H AND +H3NCH2CO2- [J].
HABERFIELD, P .
JOURNAL OF CHEMICAL EDUCATION, 1980, 57 (05) :346-347
[13]   MAIN CONFORMER OF GASEOUS GLYCINE - MOLECULAR-STRUCTURE AND ROTATIONAL BARRIER FROM ELECTRON-DIFFRACTION DATA AND ROTATIONAL-CONSTANTS [J].
IIJIMA, K ;
TANAKA, K ;
ONUMA, S .
JOURNAL OF MOLECULAR STRUCTURE, 1991, 246 (3-4) :257-266
[14]   PRECISION NEUTRON-DIFFRACTION STRUCTURE DETERMINATION OF PROTEIN AND NUCLEIC-ACID COMPONENTS .3. CRYSTAL AND MOLECULAR STRUCTURE OF AMINO-ACID ALPHA-GLYCINE [J].
JONSSON, PG ;
KVICK, A .
ACTA CRYSTALLOGRAPHICA SECTION B-STRUCTURAL CRYSTALLOGRAPHY AND CRYSTAL CHEMISTRY, 1972, B 28 (06) :1827-&
[15]   Treatment of the outlying charge in continuum solvation models [J].
Klamt, A ;
Jonas, V .
JOURNAL OF CHEMICAL PHYSICS, 1996, 105 (22) :9972-9981
[16]   Refinement and parametrization of COSMO-RS [J].
Klamt, A ;
Jonas, V ;
Bürger, T ;
Lohrenz, JCW .
JOURNAL OF PHYSICAL CHEMISTRY A, 1998, 102 (26) :5074-5085
[17]   COSMO - A NEW APPROACH TO DIELECTRIC SCREENING IN SOLVENTS WITH EXPLICIT EXPRESSIONS FOR THE SCREENING ENERGY AND ITS GRADIENT [J].
KLAMT, A ;
SCHUURMANN, G .
JOURNAL OF THE CHEMICAL SOCIETY-PERKIN TRANSACTIONS 2, 1993, (05) :799-805
[18]  
MORSE PM, 1953, METHODS THEORETICAL, P1266
[19]   GEPOL - AN IMPROVED DESCRIPTION OF MOLECULAR-SURFACES .3. A NEW ALGORITHM FOR THE COMPUTATION OF A SOLVENT-EXCLUDING SURFACE [J].
PASCUALAHUIR, JL ;
SILLA, E ;
TUNON, I .
JOURNAL OF COMPUTATIONAL CHEMISTRY, 1994, 15 (10) :1127-1138
[20]  
Press W.H., 1992, NUMERICAL RECIPES FO