Some aspects of quantitative analysis and correction of radiation damage

被引:81
作者
Diederichs, K [1 ]
机构
[1] Univ Konstanz, Fachbereich Biol, D-78457 Constance, Germany
来源
ACTA CRYSTALLOGRAPHICA SECTION D-BIOLOGICAL CRYSTALLOGRAPHY | 2006年 / 62卷
关键词
D O I
10.1107/S0907444905031537
中图分类号
Q5 [生物化学];
学科分类号
071010 ; 081704 ;
摘要
Radiation damage is the major source of systematic error in macromolecular data collected at third-generation synchrotron beamlines. In this paper, a simple way of analysing data for radiation damage is proposed and shown to give results that are easy to interpret. Results of correction of radiation damage obtained with an exponential decay function as implemented in XSCALE ( from the XDS package) are shown, and aspects of the mathematical treatment of radiation damage, as well as experimental requirements for the correction and utilization of radiation damage are discussed. Furthermore, a method for quantifying the coverage and evenness of sampling of rotation range is proposed.
引用
收藏
页码:96 / 101
页数:6
相关论文
共 15 条
[11]   Specific radiation damage can be used to solve macromolecular crystal structures [J].
Ravelli, RBG ;
Leiros, HKS ;
Pan, BC ;
Caffrey, M ;
McSweeney, S .
STRUCTURE, 2003, 11 (02) :217-224
[12]   The 'fingerprint' that X-rays can leave on structures [J].
Ravelli, RBG ;
McSweeney, SM .
STRUCTURE, 2000, 8 (03) :315-328
[13]   Phasing in the presence of severe-site specific radiation damage through dose-dependent modelling of heavy atoms [J].
Schiltz, M ;
Dumas, P ;
Ennifar, E ;
Flensburg, C ;
Paciorek, W ;
Vonrhein, C ;
Bricogne, G .
ACTA CRYSTALLOGRAPHICA SECTION D-STRUCTURAL BIOLOGY, 2004, 60 :1024-1031
[14]   Observation of time-resolved structural changes by linear interpolation of highly redundant X-ray diffraction data [J].
Wang, J ;
Ealick, SE .
ACTA CRYSTALLOGRAPHICA SECTION D-STRUCTURAL BIOLOGY, 2004, 60 :1579-1585
[15]   Determination of a novel structure by a combination of long-wavelength sulfur phasing and radiation-damage-induced phasing [J].
Weiss, MS ;
Mander, G ;
Hedderich, R ;
Diederichs, K ;
Ermler, U ;
Warkentin, E .
ACTA CRYSTALLOGRAPHICA SECTION D-STRUCTURAL BIOLOGY, 2004, 60 :686-695