Optimization of DsRed production in Escherichia coli:: Effect of ribosome binding site sequestration on translation efficiency

被引:21
作者
Pfleger, BF
Fawzi, NJ
Keasling, JD [1 ]
机构
[1] Univ Calif Berkeley, Dept Chem Engn, Berkeley, CA 94720 USA
[2] Univ Calif Berkeley, Dept Bioengn, Berkeley, CA USA
[3] Lawrence Berkeley Natl Lab, Dept Synthet Biol, Phys Biosci Div, Berkeley, CA USA
关键词
D O I
10.1002/bit.20630
中图分类号
Q81 [生物工程学(生物技术)]; Q93 [微生物学];
学科分类号
071005 ; 0836 ; 090102 ; 100705 ;
摘要
DsRed-Express, a popular reporter protein, cannot be expressed in Escherichia coli using a consensus ribosome binding site (RBS) potentially due to base-pairing in the RBS that inhibits translation initiation. Saturation mutagenesis was used to probe for a gene sequence that minimized base-pairing in the RBS while maintaining the same spectral properties and maturation characteristics as DsRed-Express. The new DsRed, designated here as RFPEC for E. coli optimized red fluorescent protein, fluoresces 2.5 times greater than DsRed-Express when expressed from the same vector. (c) 2005 Wiley Periodicals, Inc.
引用
收藏
页码:553 / 558
页数:6
相关论文
共 17 条
[1]   Rapidly maturing variants of the Discosoma red fluorescent protein (DsRed) [J].
Bevis, BJ ;
Glick, BS .
NATURE BIOTECHNOLOGY, 2002, 20 (01) :83-87
[2]   A monomeric red fluorescent protein [J].
Campbell, RE ;
Tour, O ;
Palmer, AE ;
Steinbach, PA ;
Baird, GS ;
Zacharias, DA ;
Tsien, RY .
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 2002, 99 (12) :7877-7882
[3]   Controlling messenger RNA stability in bacteria: Strategies for engineering gene expression [J].
Carrier, TA ;
Keasling, JD .
BIOTECHNOLOGY PROGRESS, 1997, 13 (06) :699-708
[4]  
DESMIT MH, 1990, PROG NUCLEIC ACID RE, V38, P1
[5]   TRANSLATIONAL INITIATION ON STRUCTURED MESSENGERS - ANOTHER ROLE FOR THE SHINE-DALGARNO INTERACTION [J].
DESMIT, MH ;
VANDUIN, J .
JOURNAL OF MOLECULAR BIOLOGY, 1994, 235 (01) :173-184
[6]   POSTTRANSCRIPTIONAL REGULATORY MECHANISMS IN ESCHERICHIA-COLI [J].
GOLD, L .
ANNUAL REVIEW OF BIOCHEMISTRY, 1988, 57 :199-233
[7]   TIGHT REGULATION, MODULATION, AND HIGH-LEVEL EXPRESSION BY VECTORS CONTAINING THE ARABINOSE P-BAD PROMOTER [J].
GUZMAN, LM ;
BELIN, D ;
CARSON, MJ ;
BECKWITH, J .
JOURNAL OF BACTERIOLOGY, 1995, 177 (14) :4121-4130
[8]   In the absence of translation, RNase E can bypass 5′ mRNA stabilizers in Escherichia coli [J].
Joyce, SA ;
Dreyfus, M .
JOURNAL OF MOLECULAR BIOLOGY, 1998, 282 (02) :241-254
[9]   Biotechnological applications of green fluorescent protein [J].
March, JC ;
Rao, G ;
Bentley, WE .
APPLIED MICROBIOLOGY AND BIOTECHNOLOGY, 2003, 62 (04) :303-315
[10]   Fluorescent proteins from nonbioluminescent Anthozoa species [J].
Matz, MV ;
Fradkov, AF ;
Labas, YA ;
Savitsky, AP ;
Zaraisky, AG ;
Markelov, ML ;
Lukyanov, SA .
NATURE BIOTECHNOLOGY, 1999, 17 (10) :969-973