Computational determination of aqueous pKa values of protonated benzimidazoles (part 1)

被引:89
作者
Brown, TN [1 ]
Mora-Diez, N [1 ]
机构
[1] Thompson Rivers Univ, Dept Chem, Kamloops, BC V2C 5N3, Canada
关键词
D O I
10.1021/jp055084i
中图分类号
O64 [物理化学(理论化学)、化学物理学];
学科分类号
070304 ; 081704 ;
摘要
Benzimidazoles are the organic compounds investigated in this work. The experimental determination of the pK(a) values of protonated benzimidazoles in water is a challenge because of their low solubility. In addition, some derivatives are involved in tautomeric equilibria which increase the complexity of the theoretical pKa determinations. In the present study, different approaches are considered to develop a methodology for the accurate prediction of aqueous pKa values of protonated benzimidazoles at 298.15 K. We have considered different reaction schemes for approximating the acid dissociation equilibrium; two distinct equations are used for the calculation of pK(a) values, and a number of levels of theory and empirical corrections are applied in the process of working toward this aim. The best correlations between the experimental and calculated data are obtained at the B3LYP/6-31+G( d,p)- PCM( opt) level of theory. The predictive capabilities of the methodologies attempted are tested with two compounds that were not included in the set of benzimidazoles initially investigated. The direct calculations differ significantly from the expected values, but the pKa values calculated using the correlation equations are very similar and in reasonable agreement with the expected pK(a) values.
引用
收藏
页码:9270 / 9279
页数:10
相关论文
共 56 条
[21]   First-principle predictions of absolute pKa's of organic acids in dimethyl sulfoxide solution [J].
Fu, Y ;
Liu, L ;
Li, RC ;
Liu, R ;
Guo, QX .
JOURNAL OF THE AMERICAN CHEMICAL SOCIETY, 2004, 126 (03) :814-822
[22]   A QSPR-approach to the estimation of the pKHB of six-membered nitrogen-heterocycles using quantum mechanically derived descriptors [J].
Hennemann, M ;
Clark, T .
JOURNAL OF MOLECULAR MODELING, 2002, 8 (04) :95-101
[23]  
HOFMAN K, 1953, IMIDAZOLE ITS DERIVA
[24]   pKa values of guanine in water:: Density functional theory calculations combined with Poisson-Boltzmann continuum-solvation model [J].
Jang, YH ;
Goddard, WA ;
Noyes, KT ;
Sowers, LC ;
Hwang, S ;
Chung, DS .
JOURNAL OF PHYSICAL CHEMISTRY B, 2003, 107 (01) :344-357
[25]  
Kapinos LE, 1999, CHEM-EUR J, V5, P1794, DOI 10.1002/(SICI)1521-3765(19990604)5:6<1794::AID-CHEM1794>3.3.CO
[26]  
2-W
[27]   Synthesis and antimycobacterial activity of 2-substituted halogenobenzimidazoles [J].
Kazimierczuk, Z ;
Andrzejewska, M ;
Kaustova, J ;
Klimesova, V .
EUROPEAN JOURNAL OF MEDICINAL CHEMISTRY, 2005, 40 (02) :203-208
[28]   First principles calculations of aqueous pKa values for organic and inorganic acids using COSMO-RS reveal an inconsistency in the slope of the pKa scale [J].
Klamt, A ;
Eckert, F ;
Diedenhofen, M ;
Beck, ME .
JOURNAL OF PHYSICAL CHEMISTRY A, 2003, 107 (44) :9380-9386
[29]   COSMO - A NEW APPROACH TO DIELECTRIC SCREENING IN SOLVENTS WITH EXPLICIT EXPRESSIONS FOR THE SCREENING ENERGY AND ITS GRADIENT [J].
KLAMT, A ;
SCHUURMANN, G .
JOURNAL OF THE CHEMICAL SOCIETY-PERKIN TRANSACTIONS 2, 1993, (05) :799-805
[30]   Synthesis and preliminary evaluation of benzimidazole derivatives as antimicrobial agents [J].
Klimesová, V ;
Kocí, J ;
Pour, M ;
Stachel, J ;
Waisser, K ;
Kaustová, J .
EUROPEAN JOURNAL OF MEDICINAL CHEMISTRY, 2002, 37 (05) :409-418