Improvement of the reference interaction site model theory for calculating the partial molar volume of amino acids and polypeptides.

被引:24
作者
Kinoshita, M [1 ]
Imai, T
Kovalenko, A
Hirata, F
机构
[1] Kyoto Univ, Inst Adv Energy, Kyoto 6110011, Japan
[2] Inst Mol Sci, Aichi 4448585, Japan
[3] Grad Univ Adv Studies, Aichi 4448585, Japan
基金
日本学术振兴会;
关键词
D O I
10.1016/S0009-2614(01)01129-0
中图分类号
O64 [物理化学(理论化学)、化学物理学];
学科分类号
070304 ; 081704 ;
摘要
We propose a simple, efficient bridge correction of the one-dimensional reference interaction site model (1D-RISM) theory. By combining the modified RISM method with the Kirkwood-Buff theory, the partial molar volume (PMV) is calculated for the 20 amino acids and for oligopeptides of glutamic. acids in extended and oc-helix conformations. The bridge correction drastically improves agreement between the calculated values and the experimental data. (C) 2001 Elsevier Science B.V. All rights reserved.
引用
收藏
页码:337 / 342
页数:6
相关论文
共 25 条
[1]   An accurate theoretical description of fluids composed of fully anisotropic molecules: Application to C-2v symmetry [J].
Alvarez, M ;
Lado, F ;
Lomba, E ;
Lombardero, M ;
Martin, C .
JOURNAL OF CHEMICAL PHYSICS, 1997, 107 (12) :4642-4647
[2]   THE APPLICATION OF INTEGRAL-EQUATION THEORIES TO FLUIDS OF NONSPHERICAL PARTICLES NEAR A UNIFORM PLANAR WALL [J].
BERARD, DR ;
PATEY, GN .
JOURNAL OF CHEMICAL PHYSICS, 1991, 95 (07) :5281-5288
[3]   INTEGRAL-EQUATION THEORY FOR CHARGED LIQUIDS - MODEL 2-2 ELECTROLYTES AND THE BRIDGE FUNCTION [J].
DUH, DM ;
HAYMET, ADJ .
JOURNAL OF CHEMICAL PHYSICS, 1992, 97 (10) :7716-7729
[4]   Integral equation theory for Lennard-Jones fluids: The bridge function and applications to pure fluids and mixtures [J].
Duh, DM ;
Henderson, D .
JOURNAL OF CHEMICAL PHYSICS, 1996, 104 (17) :6742-6754
[5]   Theoretical study for partial molar volume of amino acids and polypeptides by the three-dimensional reference interaction site model [J].
Harano, Y ;
Imai, T ;
Kovalenko, A ;
Kinoshita, M ;
Hirata, F .
JOURNAL OF CHEMICAL PHYSICS, 2001, 114 (21) :9506-9511
[6]   Theoretical study for partial molar volume of amino acids in aqueous solution: Implication of ideal fluctuation volume [J].
Imai, T ;
Kinoshita, M ;
Hirata, F .
JOURNAL OF CHEMICAL PHYSICS, 2000, 112 (21) :9469-9478
[7]   PARTIAL MOLAR VOLUMES AND ADIABATIC COMPRESSIBILITIES OF AMINO-ACIDS IN DILUTE AQUEOUS-SOLUTIONS AT 5, 15, 25, 35, AND 45-DEGREES-C [J].
KIKUCHI, M ;
SAKURAI, M ;
NITTA, K .
JOURNAL OF CHEMICAL AND ENGINEERING DATA, 1995, 40 (04) :935-942
[8]   Analysis on conformational stability of C-peptide of ribonuclease A in water using the reference interaction site model theory and Monte Carlo simulated annealing [J].
Kinoshita, M ;
Okamoto, Y ;
Hirata, F .
JOURNAL OF CHEMICAL PHYSICS, 1999, 110 (08) :4090-4100
[9]   First-principle determination of peptide conformations in solvents: Combination of Monte Carlo simulated annealing and RISM theory [J].
Kinoshita, M ;
Okamoto, Y ;
Hirata, F .
JOURNAL OF THE AMERICAN CHEMICAL SOCIETY, 1998, 120 (08) :1855-1863
[10]   Hydration structure and stability of Met-enkephalin studied by a three-dimensional reference interaction site model with a repulsive bridge correction and a thermodynamic perturbation method [J].
Kovalenko, A ;
Hirata, F ;
Kinoshita, M .
JOURNAL OF CHEMICAL PHYSICS, 2000, 113 (21) :9830-9836