FORTE: a profile-profile comparison tool for protein fold recognition

被引:59
作者
Tomii, K [1 ]
Akiyama, Y [1 ]
机构
[1] Natl Inst Adv Ind Sci & Technol, Computat Biol Res Ctr, Koto Ku, Tokyo 1350064, Japan
关键词
D O I
10.1093/bioinformatics/btg474
中图分类号
Q5 [生物化学];
学科分类号
071010 ; 081704 ;
摘要
Summary: We present FORTE, a profile-profile comparison tool for protein fold recognition. Users can submit a protein sequence to explore the possibilities of structural similarity existing in known structures. Results are reported via email in the form of pairwise alignments.
引用
收藏
页码:594 / 595
页数:2
相关论文
共 13 条
[1]   Gapped BLAST and PSI-BLAST: a new generation of protein database search programs [J].
Altschul, SF ;
Madden, TL ;
Schaffer, AA ;
Zhang, JH ;
Zhang, Z ;
Miller, W ;
Lipman, DJ .
NUCLEIC ACIDS RESEARCH, 1997, 25 (17) :3389-3402
[2]   The Protein Data Bank [J].
Berman, HM ;
Westbrook, J ;
Feng, Z ;
Gilliland, G ;
Bhat, TN ;
Weissig, H ;
Shindyalov, IN ;
Bourne, PE .
NUCLEIC ACIDS RESEARCH, 2000, 28 (01) :235-242
[3]   ASTRAL compendium enhancements [J].
Chandonia, JM ;
Walker, NS ;
Conte, LL ;
Koehl, P ;
Levitt, M ;
Brenner, SE .
NUCLEIC ACIDS RESEARCH, 2002, 30 (01) :260-263
[4]  
Fischer D, 2001, PROTEINS, P171
[5]  
MURZIN AG, 1995, J MOL BIOL, V247, P536, DOI 10.1016/S0022-2836(05)80134-2
[6]   PDB-REPRDB: a database of representative protein chains from the Protein Data Bank (PDB) in 2003 [J].
Noguchi, T ;
Akiyama, Y .
NUCLEIC ACIDS RESEARCH, 2003, 31 (01) :492-493
[7]   Finding weak similarities between proteins by sequence profile comparison [J].
Panchenko, AR .
NUCLEIC ACIDS RESEARCH, 2003, 31 (02) :683-689
[8]   The CATH extended protein-family database: Providing structural annotations for genome sequences [J].
Pearl, FMG ;
Lee, D ;
Bray, JE ;
Buchan, DWA ;
Shepherd, AJ ;
Orengo, CA .
PROTEIN SCIENCE, 2002, 11 (02) :233-244
[9]   Comparison of sequence profiles. Strategies for structural predictions using sequence information [J].
Rychlewski, L ;
Jaroszewski, L ;
Li, WZ ;
Godzik, A .
PROTEIN SCIENCE, 2000, 9 (02) :232-241
[10]  
Schäffer AA, 1999, BIOINFORMATICS, V15, P1000