Building a chemical space based on fragment descriptors

被引:16
作者
Baskin, Igor [2 ]
Varnek, Alexandre [1 ]
机构
[1] Univ Strasbourg, Lab Infochim, CNRS, UMR 7177, F-67000 Strasbourg, France
[2] Moscow MV Lomonosov State Univ, Dept Chem, Moscow 119992, Russia
关键词
fragmental approach; fragment descriptors; QSAR; QSPR; filtering; similarity; virtual screening; in silico design;
D O I
10.2174/138620708785739907
中图分类号
Q5 [生物化学];
学科分类号
071010 ; 081704 ;
摘要
This article reviews the application of fragment descriptors at different stages of virtual screening: filtering, similarity search, and direct activity assessment using QSAR/QSPR models. Several case studies are considered. It is demonstrated that the power of fragment descriptors stems from their universality, very high computational efficiency, simplicity of interpretation and versatility.
引用
收藏
页码:661 / 668
页数:8
相关论文
共 139 条
[41]   ATOMIC PHYSICOCHEMICAL PARAMETERS FOR 3-DIMENSIONAL-STRUCTURE-DIRECTED QUANTITATIVE STRUCTURE-ACTIVITY-RELATIONSHIPS .2. MODELING DISPERSIVE AND HYDROPHOBIC INTERACTIONS [J].
GHOSE, AK ;
CRIPPEN, GM .
JOURNAL OF CHEMICAL INFORMATION AND COMPUTER SCIENCES, 1987, 27 (01) :21-35
[43]   ATOMIC PHYSICOCHEMICAL PARAMETERS FOR 3-DIMENSIONAL STRUCTURE DIRECTED QUANTITATIVE STRUCTURE-ACTIVITY-RELATIONSHIPS .3. MODELING HYDROPHOBIC INTERACTIONS [J].
GHOSE, AK ;
PRITCHETT, A ;
CRIPPEN, GM .
JOURNAL OF COMPUTATIONAL CHEMISTRY, 1988, 9 (01) :80-90
[44]   Structure-based virtual screening of chemical libraries for drug discovery [J].
Ghosh, Sutapa ;
Nie, Aihua ;
An, Jing ;
Huang, Ziwei .
CURRENT OPINION IN CHEMICAL BIOLOGY, 2006, 10 (03) :194-202
[45]  
Glen RC, 2006, IDRUGS, V9, P199
[46]   POT-DMC: A virtual screening method for the identification of potent hits [J].
Godden, JW ;
Stahura, FL ;
Bajorath, J .
JOURNAL OF MEDICINAL CHEMISTRY, 2004, 47 (23) :5608-5611
[47]   Molecular similarity analysis and virtual screening by mapping of consensus positions in binary-transformed chemical descriptor spaces with variable dimensionality [J].
Godden, JW ;
Furr, JR ;
Xue, L ;
Stahura, FL ;
Bajorath, J .
JOURNAL OF CHEMICAL INFORMATION AND COMPUTER SCIENCES, 2004, 44 (01) :21-29
[48]   Differential shannon entropy as a sensitive measure of differences in database variability of molecular descriptors [J].
Godden, JW ;
Bajorath, J .
JOURNAL OF CHEMICAL INFORMATION AND COMPUTER SCIENCES, 2001, 41 (04) :1060-1066
[49]  
GOLENDER VE, 1974, AVTOMAT TELEMEKH, P99
[50]  
GOLENDER VE, 1980, MED CHEM, V11, P299