Plant Ontology (PO): a controlled vocabulary of plant structures and growth stages

被引：99

作者：

Jalswal, P

Avraham, S

Ilic, K

Kellogg, EA

McCouch, S

Pujar, A

Reiser, L

Rhee, SY

Sachs, MM

Schaeffer, M

Stein, L

Stevens, P

Vincent, L

Ware, D

Zapata, F

机构：

[1] Cornell Univ, Dept Plant Breeding, Ithaca, NY 14853 USA

[2] Cold Spring Harbor Lab, Cold Spring Harbor, NY 11724 USA

[3] Carnegie Inst Sci, Dept Plant Biol, Stanford, CA 94305 USA

[4] Univ Missouri, Dept Biol, St Louis, MO 63121 USA

[5] Univ Illinois, Dept Crop Sci, Stock Ctr, Urbana, IL 61801 USA

[6] Cornell Univ, USDA ARS, Soil & Nutr Lab, Res Unit, Ithaca, NY 14853 USA

[7] Univ Missouri, Columbia, MO 65211 USA

[8] Missouri Bot Garden, St Louis, MO 63110 USA

来源：

COMPARATIVE AND FUNCTIONAL GENOMICS | 2005年 / 6卷 / 7-8期

关键词：

plant growth stage; controlled vocabulary; plant ontology; plant development; plant anatomy; plant morphology; gene expression; phenotype;

D O I：

10.1002/cfg.496

中图分类号：

Q5 [生物化学]; Q7 [分子生物学];

学科分类号：

071010 ; 081704 ;

摘要：

The Plant Ontology Consortium (POC) (www.plantontology.org) is a collaborative effort among several plant databases and experts in plant systematics, botany and genomics. A primary goal of the POC is to develop simple yet robust and extensible controlled vocabularies that accurately reflect the biology of plant structures and developmental stages. These provide a network of vocabularies linked by relationships (ontology) to facilitate queries that cut across datasets within a database or between multiple databases. The current version of the ontology integrates diverse vocabularies used to describe Arabidopsis, maize and rice (Oryza sp.) anatomy, morphology and growth stages. Using the ontology browser, over 3500 gene annotations from three species-specific databases, The Arabidopsis Information Resource (TAIR) for Arabidopsis, Gramene for rice and MaizeGDB for maize, can now be queried and retrieved. Copyright (c) 2006 John Wiley & Sons, Ltd.

引用

页码：388 / 397

页数：10

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