File Formats Commonly Used in Mass Spectrometry Proteomics

被引:59
作者
Deutsch, Eric W. [1 ]
机构
[1] Inst Syst Biol, Seattle, WA 98109 USA
关键词
OPEN-SOURCE SOFTWARE; PEPTIDE IDENTIFICATION; STATISTICAL-MODEL; TANDEM; VALIDATION; FRAMEWORK; PROTEINS; LIBRARY; TOOLS; REPRESENTATION;
D O I
10.1074/mcp.R112.019695
中图分类号
Q5 [生物化学];
学科分类号
071010 ; 081704 ;
摘要
The application of mass spectrometry (MS) to the analysis of proteomes has enabled the high-throughput identification and abundance measurement of hundreds to thousands of proteins per experiment. However, the formidable informatics challenge associated with analyzing MS data has required a wide variety of data file formats to encode the complex data types associated with MS workflows. These formats encompass the encoding of input instruction for instruments, output products of the instruments, and several levels of information and results used by and produced by the informatics analysis tools. A brief overview of the most common file formats in use today is presented here, along with a discussion of related topics. Molecular & Cellular Proteomics 11: 10.1074/mcp.R112.019695, 1612-1621, 2012.
引用
收藏
页码:1612 / 1621
页数:10
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