Visualization of multiple genome annotations and alignments with the K-BROWSER

被引:11
作者
Chakrabarti, K
Pachter, L [1 ]
机构
[1] Univ Calif Berkeley, Dept Math, Berkeley, CA 94720 USA
[2] Univ Calif Berkeley, Dept Comp Sci, Berkeley, CA 94720 USA
关键词
D O I
10.1101/gr.1957004
中图分类号
Q5 [生物化学]; Q7 [分子生物学];
学科分类号
071010 ; 081704 ;
摘要
We introduce a novel genome browser application, the K-BROWSER, that allows intuitive visualization of biological information across an arbitrary number of multiply aligned genomes. In particular, the K-BROWSER simultaneously displays an arbitrary number of genomes both through overlaid annotations and predictions that describe their respective characteristics, and through the multiple alignment that describes their global relationship to one another. The browsing environment has been designed to allow users seamless access to information available in every genome and, furthermore, to allow easy navigation within and between genomes. As of the date of publication, the K-BROWSER has been set up on the human, mouse, and rat genomes.
引用
收藏
页码:716 / 720
页数:5
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