Dynamic Integration of Splicing within Gene Regulatory Pathways

被引:338
作者
Braunschweig, Ulrich [1 ]
Gueroussov, Serge [1 ,2 ]
Plocik, Alex M. [3 ]
Graveley, Brenton R. [3 ]
Blencowe, Benjamin J. [1 ,2 ]
机构
[1] Univ Toronto, Donnelly Ctr, Banting & Best Dept Med Res, Toronto, ON M5S 1A8, Canada
[2] Univ Toronto, Dept Mol Genet, Toronto, ON M5S 1A8, Canada
[3] Univ Connecticut, Ctr Hlth, Inst Syst Genom, Dept Genet & Dev Biol, Farmington, CT 06030 USA
基金
加拿大自然科学与工程研究理事会; 加拿大健康研究院;
关键词
PRE-MESSENGER-RNA; C-TERMINAL DOMAIN; CELL-FREE FORMATION; SR-LIKE PROTEIN; POLYMERASE-II; NUCLEAR EXPORT; HISTONE H3; LYSINE; 9; COUPLING TRANSCRIPTION; CHROMATIN SIGNATURES;
D O I
10.1016/j.cell.2013.02.034
中图分类号
Q5 [生物化学]; Q7 [分子生物学];
学科分类号
071010 ; 081704 ;
摘要
Precursor mRNA splicing is one of the most highly regulated processes in metazoan species. In addition to generating vast repertoires of RNAs and proteins, splicing has a profound impact on other gene regulatory layers, including mRNA transcription, turnover, transport, and translation. Conversely, factors regulating chromatin and transcription complexes impact the splicing process. This extensive crosstalk between gene regulatory layers takes advantage of dynamic spatial, physical, and temporal organizational properties of the cell nucleus, and further emphasizes the importance of developing a multidimensional understanding of splicing control.
引用
收藏
页码:1252 / 1269
页数:18
相关论文
共 171 条
[51]   Phosphorylated RNA polymerase II stimulates pre-mRNA splicing [J].
Hirose, Y ;
Tacke, R ;
Manley, JL .
GENES & DEVELOPMENT, 1999, 13 (10) :1234-1239
[52]   Discovery and Annotation of Functional Chromatin Signatures in the Human Genome [J].
Hon, Gary ;
Wang, Wei ;
Ren, Bing .
PLOS COMPUTATIONAL BIOLOGY, 2009, 5 (11)
[53]   The spliceosome: a flexible, reversible macromolecular machine [J].
Hoskins, Aaron A. ;
Moore, Melissa J. .
TRENDS IN BIOCHEMICAL SCIENCES, 2012, 37 (05) :179-188
[54]   Ordered and Dynamic Assembly of Single Spliceosomes [J].
Hoskins, Aaron A. ;
Friedman, Larry J. ;
Gallagher, Sarah S. ;
Crawford, Daniel J. ;
Anderson, Eric G. ;
Wombacher, Richard ;
Ramirez, Nicholas ;
Cornish, Virginia W. ;
Gelles, Jeff ;
Moore, Melissa J. .
SCIENCE, 2011, 331 (6022) :1289-1295
[55]   The RNA polymerase II CTD coordinates transcription and RNA processing [J].
Hsin, Jing-Ping ;
Manley, James L. .
GENES & DEVELOPMENT, 2012, 26 (19) :2119-2137
[56]   Mediator Complex Regulates Alternative mRNA Processing via the MED23 Subunit [J].
Huang, Yan ;
Li, Wencheng ;
Yao, Xiao ;
Lin, Qi-jiang ;
Yin, Jing-wen ;
Liang, Yan ;
Heiner, Monika ;
Tian, Bin ;
Hui, Jingyi ;
Wang, Gang .
MOLECULAR CELL, 2012, 45 (04) :459-469
[57]   Reciprocal intronic and exonic histone modification regions in humans [J].
Huff, Jason T. ;
Plocik, Alex M. ;
Guthrie, Christine ;
Yamamoto, Keith R. .
NATURE STRUCTURAL & MOLECULAR BIOLOGY, 2010, 17 (12) :1495-U127
[58]   Global impact of RNA polymerase II elongation inhibition on alternative splicing regulation [J].
Ip, Joanna Y. ;
Schmidt, Dominic ;
Pan, Qun ;
Ramani, Arun K. ;
Fraser, Andrew G. ;
Odom, Duncan T. ;
Blencowe, Benjamin J. .
GENOME RESEARCH, 2011, 21 (03) :390-401
[59]   Alternative splicing: decoding an expansive regulatory layer [J].
Irimia, Manuel ;
Blencowe, Benjamin J. .
CURRENT OPINION IN CELL BIOLOGY, 2012, 24 (03) :323-332
[60]   Upf1 phosphorylation triggers translational repression during nonsense-mediated mRNA decay [J].
Isken, Olaf ;
Kim, Yoon Ki ;
Hosoda, Nao ;
Mayeur, Greg L. ;
Hershey, John W. B. ;
Maquat, Lynne E. .
CELL, 2008, 133 (02) :314-327