Updates to BioSamples database at European Bioinformatics Institute

被引：21

作者：

Faulconbridge, Adam ^{[1
]}

Burdett, Tony ^{[1
]}

Brandizi, Marco ^{[1
]}

Gostev, Mikhail ^{[1
]}

Pereira, Rui ^{[1
]}

Vasant, Drashtti ^{[1
]}

Sarkans, Ugis ^{[1
]}

Brazma, Alvis ^{[1
]}

Parkinson, Helen ^{[1
]}

机构：

[1] European Bioinformat Inst EMBL EBI, European Mol Biol Lab, Cambridge CB10 1SD, England

来源：

NUCLEIC ACIDS RESEARCH | 2014年 / 42卷 / D1期

基金：

英国医学研究理事会; 英国惠康基金;

关键词：

INFORMATION; ONTOLOGY; GENOME;

D O I：

10.1093/nar/gkt1081

中图分类号：

Q5 [生物化学]; Q7 [分子生物学];

学科分类号：

071010 ; 081704 ;

摘要：

The BioSamples database at the EBI (http://www.ebi.ac.uk/biosamples) provides an integration point for BioSamples information between technology specific databases at the EBI, projects such as ENCODE and reference collections such as cell lines. The database delivers a unified query interface and API to query sample information across EBI's databases and provides links back to assay databases. Sample groups are used to manage related samples, e.g. those from an experimental submission, or a single reference collection. Infrastructural improvements include a new user interface with ontological and key word queries, a new query API, a new data submission API, complete RDF data download and a supporting SPARQL endpoint, accessioning at the point of submission to the European Nucleotide Archive and European Genotype Phenotype Archives and improved query response times.

引用

页码：D50 / D52

页数：3

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