Orotidine 5′-Monophosphate Decarboxylase: Transition State Stabilization from Remote Protein-Phosphodianion Interactions

被引:37
作者
Amyes, Tina L. [1 ]
Ming, Shonoi A. [1 ]
Goldman, Lawrence M. [1 ]
Wood, B. McKay [2 ,3 ]
Desai, Bijoy J. [2 ,3 ]
Gerlt, John A. [2 ,3 ]
Richard, John P. [1 ]
机构
[1] SUNY Buffalo, Dept Chem, Buffalo, NY 14260 USA
[2] Univ Illinois, Dept Biochem, Urbana, IL 61801 USA
[3] Univ Illinois, Dept Chem, Urbana, IL 61801 USA
基金
美国国家卫生研究院;
关键词
PROFICIENT ENZYME; CATALYSIS; ACTIVATION;
D O I
10.1021/bi300585e
中图分类号
Q5 [生物化学]; Q7 [分子生物学];
学科分类号
071010 ; 081704 ;
摘要
Mutants of orotidine 5'-monophosphate decarboxylase containing all possible single (Q215A, Y217F, and R235A), double, and triple substitutions of the side chains that interact with the phosphodianion group of the substrate orotidine 5'-monophosphate have been prepared. Essentially the entire effect of these mutations on the decarboxylation of the truncated neutral substrate 1-(beta-D-erythrofuranosyl)orotic acid that lacks a phosphodianion group is expressed as a decrease in the third-order rate constant for activation by phosphite dianion. The results are consistent with a model in which phosphodianion binding interactions are utilized to stabilize a rare closed enzyme form that exhibits a high catalytic activity for decarboxylation.
引用
收藏
页码:4630 / 4632
页数:3
相关论文
共 16 条
[11]   A PROFICIENT ENZYME [J].
RADZICKA, A ;
WOLFENDEN, R .
SCIENCE, 1995, 267 (5194) :90-93
[12]   On the importance of being zwitterionic: enzymatic catalysis of decarboxylation and deprotonation of cationic carbon [J].
Richard, JP ;
Amyes, TL .
BIOORGANIC CHEMISTRY, 2004, 32 (05) :354-366
[13]   Product deuterium isotope effect for orotidine 5′-monophosphate decarboxylase:: Evidence for the existence of a short-lived carbanion intermediate [J].
Toth, Krisztina ;
Amyes, Tina L. ;
Wood, Bryant M. ;
Chan, Kui ;
Gerlt, John A. ;
Richard, John P. .
JOURNAL OF THE AMERICAN CHEMICAL SOCIETY, 2007, 129 (43) :12946-+
[14]   An Examination of the Relationship between Active Site Loop Size and Thermodynamic Activation Parameters for Orotidine 5′-Monophosphate Decarboxylase from Mesophilic and Thermophilic Organisms [J].
Toth, Krisztina ;
Amynes, Tina L. ;
Wood, B. Mckay ;
Chan, Kui K. ;
Gerlt, John A. ;
Richard, John P. .
BIOCHEMISTRY, 2009, 48 (33) :8006-8013
[15]   ENZYME CATALYSIS - CONFLICTING REQUIREMENTS OF SUBSTRATE ACCESS AND TRANSITION-STATE AFFINITY [J].
WOLFENDEN, R .
MOLECULAR AND CELLULAR BIOCHEMISTRY, 1974, 3 (03) :207-211
[16]   Conformational Changes in Orotidine 5′-Monophosphate Decarboxylase: "Remote" Residues That Stabilize the Active Conformation [J].
Wood, B. McKay ;
Amyes, Tina L. ;
Fedorov, Alexander A. ;
Fedorov, Elena V. ;
Shabila, Andrew ;
Almo, Steven C. ;
Richard, John P. ;
Gerlt, John A. .
BIOCHEMISTRY, 2010, 49 (17) :3514-3516