Systems biology and functional genomics approaches for the identification of cellular responses to drug toxicity

被引:43
作者
Harrill, Alison Hege [1 ]
Rusyn, Ivan [1 ]
机构
[1] Univ N Carolina, Michael Hooker Res Ctr 0031, Curriculum Toxicol, Dept Environm Sci & Engn, Chapel Hill, NC 27599 USA
关键词
high-throughput toxicity screening; susceptibility; systems biology; toxicogenomics; toxicogenetics;
D O I
10.1517/17425255.4.11.1379
中图分类号
Q5 [生物化学]; Q7 [分子生物学];
学科分类号
071010 ; 081704 ;
摘要
Extensive growth in the field of molecular biology in recent decades has led to the development of new and powerful experimental and computational tools that enable the analysis of complex biological responses to chemical exposure on both a functional and structural genetic level. The ability to profile global responses on a transcriptional level has become a valuable resource in the science of toxicology and attempts are now being made to further understand toxicity mechanisms by incorporating metabolomics and proteomics approaches. in addition, recent progress in understanding the extent of the genetic diversity within and between species allows us to take a fresh look at research on genetic polymorphisms that may influence an individual's susceptibility to toxicity. Whereas new technologies have the potential to make a sizeable impact on our understanding of the mechanisms of toxicity, considerable challenges remain to be addressed, especially with regard to the regulatory acceptance and successful integration of omics data. This review highlights recent advancements in the application of functional and structural genomics techniques to chemical hazard identification and characterization, and to the understanding of the interindividual differences in susceptibility to adverse drug reactions.
引用
收藏
页码:1379 / 1389
页数:11
相关论文
共 88 条
[1]  
ADACHI Y, 1994, HEPATOLOGY, V20, P453, DOI 10.1002/hep.1840200227
[2]   Depletion of Kupffer cell function by gadolinium chloride attenuates thioacetamide-induced hepatotoxicity -: Expression of metallothionein and HSP70 [J].
Andrés, D ;
Sánchez-Reus, I ;
Bautista, M ;
Cascales, M .
BIOCHEMICAL PHARMACOLOGY, 2003, 66 (06) :917-926
[3]  
[Anonymous], Distributed Structure-Searchable Toxicity Database
[4]   Cutting-edge technology - I. Global gene expression profiling using DNA microarrays [J].
Arcellana-Panlilio, M ;
Robbins, SM .
AMERICAN JOURNAL OF PHYSIOLOGY-GASTROINTESTINAL AND LIVER PHYSIOLOGY, 2002, 282 (03) :G397-G402
[5]   Standardizing global gene expression analysis between laboratories and across platforms [J].
Bammler, T ;
Beyer, RP ;
Bhattacharya, S ;
Boorman, GA ;
Boyles, A ;
Bradford, BU ;
Bumgarner, RE ;
Bushel, PR ;
Chaturvedi, K ;
Choi, D ;
Cunningham, ML ;
Dengs, S ;
Dressman, HK ;
Fannin, RD ;
Farun, FM ;
Freedman, JH ;
Fry, RC ;
Harper, A ;
Humble, MC ;
Hurban, P ;
Kavanagh, TJ ;
Kaufmann, WK ;
Kerr, KF ;
Jing, L ;
Lapidus, JA ;
Lasarev, MR ;
Li, J ;
Li, YJ ;
Lobenhofer, EK ;
Lu, X ;
Malek, RL ;
Milton, S ;
Nagalla, SR ;
O'Malley, JP ;
Palmer, VS ;
Pattee, P ;
Paules, RS ;
Perou, CM ;
Phillips, K ;
Qin, LX ;
Qiu, Y ;
Quigley, SD ;
Rodland, M ;
Rusyn, I ;
Samson, LD ;
Schwartz, DA ;
Shi, Y ;
Shin, JL ;
Sieber, SO ;
Slifer, S .
NATURE METHODS, 2005, 2 (05) :351-356
[6]   Significance analysis of functional categories in gene expression studies: a structured permutation approach [J].
Barry, WT ;
Nobel, AB ;
Wright, FA .
BIOINFORMATICS, 2005, 21 (09) :1943-1949
[7]  
Bartosiewicz MJ, 2001, J PHARMACOL EXP THER, V297, P895
[8]   Multicenter study of acetaminophen hepatotoxicity reveals the importance of biological endpoints in genomic analyses [J].
Beyer, Richard P. ;
Fry, Rebecca C. ;
Lasarev, Michael R. ;
McConnachie, Lisa A. ;
Meira, Lisiane B. ;
Palmer, Valerie S. ;
Powell, Christine L. ;
Ross, Pamela K. ;
Bammler, Theo K. ;
Bradford, Blair U. ;
Cranson, Alex B. ;
Cunningham, Michael L. ;
Fannin, Rickie D. ;
Higgins, Gregory M. ;
Hurban, Patrick ;
Kayton, Robert J. ;
Kerr, Kathleen F. ;
Kosyk, Oksana ;
Lobenhofer, Edward K. ;
Sieber, Stella O. ;
Vliet, Portia A. ;
Weis, Brenda K. ;
Wolfinger, Russel ;
Woods, Courtney G. ;
Freedman, Jonathan H. ;
Linney, Elwood ;
Kaufmann, William K. ;
Kavanagh, Terrance J. ;
Paules, Richard S. ;
Rusyn, Ivan ;
Samson, Leona D. ;
Spencer, Peter S. ;
Suk, William ;
Tennant, Raymond J. ;
Zarbl, Helmut .
TOXICOLOGICAL SCIENCES, 2007, 99 (01) :326-337
[9]   Toxicogenomics-based discrimination of toxic mechanism in HepG2 human hepatoma cells [J].
Burczynski, ME ;
McMillian, M ;
Ciervo, J ;
Li, L ;
Parker, JB ;
Dunn, RT ;
Hicken, S ;
Farr, S ;
Johnson, MD .
TOXICOLOGICAL SCIENCES, 2000, 58 (02) :399-415
[10]  
BURNS JJ, 1968, ANN NY ACAD SCI, V151, P959, DOI 10.1111/j.1749-6632.1968.tb11954.x