Random subspace method for multivariate feature selection

被引:147
作者
Lai, Carmen
Reinders, Marcel J. T.
Wessels, Lodewyk
机构
[1] Delft Univ Technol, Fac Elect Engn Math & Comp Sci, Informat & Commun Theory Grp, NL-2628 CD Delft, Netherlands
[2] Netherlands Canc Inst, Amsterdam, Netherlands
关键词
feature selection; random subspace method; small sample size problem;
D O I
10.1016/j.patrec.2005.12.018
中图分类号
TP18 [人工智能理论];
学科分类号
081104 ; 0812 ; 0835 ; 1405 ;
摘要
In a growing number of domains data captured encapsulates as many features as possible. This poses a challenge to classical pattern recognition techniques, since the number of samples often still is limited with respect to the number of features. Classical pattern recognition methods suffer from the small sample size, and robust classification techniques are needed. In order to reduce the dimensionality of the feature space, the selection of informative features becomes an essential step towards the classification task. The relevance of the features can be evaluated either individually (univariate approaches), or in a multivariate manner. Univariate approaches are simple and fast, therefore appealing. However, possible correlation and dependencies between the features are not considered. Therefore, multivariate search techniques may be helpful. Several limitations restrict the use of multivariate searches. First, they are prone to overtraining, especially in p >> n (many features and few samples) settings. Secondly, they can be computationally too expensive when dealing with a large feature space. We introduce a new multivariate search technique, that is less sensitive to the noise in the data and computationally feasible as well. We compare our approach with several multivariate and univariate feature selection techniques, on an artificial dataset which provides us with ground truth information, and on a real dataset. The results show the importance of multivariate search techniques and the robustness and reliability of our novel multivariate feature selection method. (c) 2006 Elsevier B.V. All rights reserved.
引用
收藏
页码:1067 / 1076
页数:10
相关论文
共 36 条
  • [11] Duin RP, 2004, PR TOOLS 4 0 MATLAB
  • [12] EINDOR L, 2004, BIOINFORMATICS
  • [13] Friedman J., 1989, J AM STAT ASS
  • [14] Molecular classification of cancer: Class discovery and class prediction by gene expression monitoring
    Golub, TR
    Slonim, DK
    Tamayo, P
    Huard, C
    Gaasenbeek, M
    Mesirov, JP
    Coller, H
    Loh, ML
    Downing, JR
    Caligiuri, MA
    Bloomfield, CD
    Lander, ES
    [J]. SCIENCE, 1999, 286 (5439) : 531 - 537
  • [15] GRATE LR, 2002, WORKSH ALG BIOINF
  • [16] Gene selection for cancer classification using support vector machines
    Guyon, I
    Weston, J
    Barnhill, S
    Vapnik, V
    [J]. MACHINE LEARNING, 2002, 46 (1-3) : 389 - 422
  • [17] Hart, 2006, PATTERN CLASSIFICATI
  • [18] Ho TK, 1998, IEEE T PATTERN ANAL, V20, P832, DOI 10.1109/34.709601
  • [19] Jain Anil, 1997, IEEE T PATTERN ANAL, V19
  • [20] Classification and diagnostic prediction of cancers using gene expression profiling and artificial neural networks
    Khan, J
    Wei, JS
    Ringnér, M
    Saal, LH
    Ladanyi, M
    Westermann, F
    Berthold, F
    Schwab, M
    Antonescu, CR
    Peterson, C
    Meltzer, PS
    [J]. NATURE MEDICINE, 2001, 7 (06) : 673 - 679