共 116 条
Bioinformatics Resources for the Study of Gene Regulation in Bacteria
被引:18
作者:

Collado-Vides, Julio
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Univ Nacl Autonoma Mexico, Programa Genom Computac, Ctr Ciencias Genom, Cuernavaca 62100, Morelos, Mexico Univ Nacl Autonoma Mexico, Programa Genom Computac, Ctr Ciencias Genom, Cuernavaca 62100, Morelos, Mexico

Salgado, Heladia
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Univ Nacl Autonoma Mexico, Programa Genom Computac, Ctr Ciencias Genom, Cuernavaca 62100, Morelos, Mexico Univ Nacl Autonoma Mexico, Programa Genom Computac, Ctr Ciencias Genom, Cuernavaca 62100, Morelos, Mexico

Morett, Enrique
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机构:
Univ Nacl Autonoma Mexico, Dept Ingn Celular & Biocatalisis, Inst Biotecnol, Cuernavaca 62100, Morelos, Mexico Univ Nacl Autonoma Mexico, Programa Genom Computac, Ctr Ciencias Genom, Cuernavaca 62100, Morelos, Mexico

Gama-Castro, Socorro
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Univ Nacl Autonoma Mexico, Programa Genom Computac, Ctr Ciencias Genom, Cuernavaca 62100, Morelos, Mexico Univ Nacl Autonoma Mexico, Programa Genom Computac, Ctr Ciencias Genom, Cuernavaca 62100, Morelos, Mexico

Jimenez-Jacinto, Veronica
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机构:
Univ Nacl Autonoma Mexico, Programa Genom Computac, Ctr Ciencias Genom, Cuernavaca 62100, Morelos, Mexico Univ Nacl Autonoma Mexico, Programa Genom Computac, Ctr Ciencias Genom, Cuernavaca 62100, Morelos, Mexico

Martinez-Flores, Irma
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Univ Nacl Autonoma Mexico, Programa Genom Computac, Ctr Ciencias Genom, Cuernavaca 62100, Morelos, Mexico Univ Nacl Autonoma Mexico, Programa Genom Computac, Ctr Ciencias Genom, Cuernavaca 62100, Morelos, Mexico

Medina-Rivera, Alejandra
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机构:
Univ Nacl Autonoma Mexico, Programa Genom Computac, Ctr Ciencias Genom, Cuernavaca 62100, Morelos, Mexico Univ Nacl Autonoma Mexico, Programa Genom Computac, Ctr Ciencias Genom, Cuernavaca 62100, Morelos, Mexico

Muniz-Rascado, Luis
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h-index: 0
机构:
Univ Nacl Autonoma Mexico, Programa Genom Computac, Ctr Ciencias Genom, Cuernavaca 62100, Morelos, Mexico Univ Nacl Autonoma Mexico, Programa Genom Computac, Ctr Ciencias Genom, Cuernavaca 62100, Morelos, Mexico

Peralta-Gil, Martin
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h-index: 0
机构:
Univ Nacl Autonoma Mexico, Programa Genom Computac, Ctr Ciencias Genom, Cuernavaca 62100, Morelos, Mexico Univ Nacl Autonoma Mexico, Programa Genom Computac, Ctr Ciencias Genom, Cuernavaca 62100, Morelos, Mexico

Santos-Zavaleta, Alberto
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h-index: 0
机构:
Univ Nacl Autonoma Mexico, Programa Genom Computac, Ctr Ciencias Genom, Cuernavaca 62100, Morelos, Mexico Univ Nacl Autonoma Mexico, Programa Genom Computac, Ctr Ciencias Genom, Cuernavaca 62100, Morelos, Mexico
机构:
[1] Univ Nacl Autonoma Mexico, Programa Genom Computac, Ctr Ciencias Genom, Cuernavaca 62100, Morelos, Mexico
[2] Univ Nacl Autonoma Mexico, Dept Ingn Celular & Biocatalisis, Inst Biotecnol, Cuernavaca 62100, Morelos, Mexico
基金:
美国国家卫生研究院;
关键词:
ESCHERICHIA-COLI K-12;
AMP RECEPTOR PROTEIN;
FACTOR-BINDING SITES;
C-TERMINAL DOMAIN;
TRANSCRIPTIONAL REGULATION;
RNA-POLYMERASE;
NUCLEOTIDE-SEQUENCE;
OPERON PREDICTION;
ALPHA-SUBUNIT;
PURB GENE;
D O I:
10.1128/JB.01017-08
中图分类号:
Q93 [微生物学];
学科分类号:
071005 ;
100705 ;
摘要:
引用
收藏
页码:23 / 31
页数:9
相关论文
共 116 条
[11]
A predictive model for transcriptional control of physiology in a free living cell
[J].
Bonneau, Richard
;
Facciotti, Marc T.
;
Reiss, David J.
;
Schmid, Amy K.
;
Pan, Min
;
Kaur, Amardeep
;
Thorsson, Vesteinn
;
Shannon, Paul
;
Johnson, Michael H.
;
Bare, J. Christopher
;
Longabaugh, William
;
Vuthoori, Madhavi
;
Whitehead, Kenia
;
Madar, Aviv
;
Suzuki, Lena
;
Mori, Tetsuya
;
Chang, Dong-Eun
;
DiRuggiero, Jocelyne
;
Johnson, Carl H.
;
Hood, Leroy
;
Baliga, Nitin S.
.
CELL,
2007, 131 (07)
:1354-1365

Bonneau, Richard
论文数: 0 引用数: 0
h-index: 0
机构:
NYU, Ctr Genome & Syst Biol, New York, NY 10003 USA
NYU, Dept Comp Sci, Courant Inst Math Sci, New York, NY 10003 USA Inst Syst Biol, Seattle, WA 98103 USA

Facciotti, Marc T.
论文数: 0 引用数: 0
h-index: 0
机构:
Inst Syst Biol, Seattle, WA 98103 USA Inst Syst Biol, Seattle, WA 98103 USA

Reiss, David J.
论文数: 0 引用数: 0
h-index: 0
机构:
Inst Syst Biol, Seattle, WA 98103 USA Inst Syst Biol, Seattle, WA 98103 USA

Schmid, Amy K.
论文数: 0 引用数: 0
h-index: 0
机构:
Inst Syst Biol, Seattle, WA 98103 USA Inst Syst Biol, Seattle, WA 98103 USA

Pan, Min
论文数: 0 引用数: 0
h-index: 0
机构:
Inst Syst Biol, Seattle, WA 98103 USA Inst Syst Biol, Seattle, WA 98103 USA

Kaur, Amardeep
论文数: 0 引用数: 0
h-index: 0
机构:
Inst Syst Biol, Seattle, WA 98103 USA Inst Syst Biol, Seattle, WA 98103 USA

Thorsson, Vesteinn
论文数: 0 引用数: 0
h-index: 0
机构:
Inst Syst Biol, Seattle, WA 98103 USA Inst Syst Biol, Seattle, WA 98103 USA

Shannon, Paul
论文数: 0 引用数: 0
h-index: 0
机构:
Inst Syst Biol, Seattle, WA 98103 USA Inst Syst Biol, Seattle, WA 98103 USA

Johnson, Michael H.
论文数: 0 引用数: 0
h-index: 0
机构:
Inst Syst Biol, Seattle, WA 98103 USA Inst Syst Biol, Seattle, WA 98103 USA

Bare, J. Christopher
论文数: 0 引用数: 0
h-index: 0
机构:
Inst Syst Biol, Seattle, WA 98103 USA Inst Syst Biol, Seattle, WA 98103 USA

Longabaugh, William
论文数: 0 引用数: 0
h-index: 0
机构:
Inst Syst Biol, Seattle, WA 98103 USA Inst Syst Biol, Seattle, WA 98103 USA

Vuthoori, Madhavi
论文数: 0 引用数: 0
h-index: 0
机构:
Inst Syst Biol, Seattle, WA 98103 USA Inst Syst Biol, Seattle, WA 98103 USA

Whitehead, Kenia
论文数: 0 引用数: 0
h-index: 0
机构:
Inst Syst Biol, Seattle, WA 98103 USA Inst Syst Biol, Seattle, WA 98103 USA

Madar, Aviv
论文数: 0 引用数: 0
h-index: 0
机构:
NYU, Ctr Genome & Syst Biol, New York, NY 10003 USA Inst Syst Biol, Seattle, WA 98103 USA

Suzuki, Lena
论文数: 0 引用数: 0
h-index: 0
机构:
Vanderbilt Univ, Nashville, TN 37240 USA Inst Syst Biol, Seattle, WA 98103 USA

论文数: 引用数:
h-index:
机构:

Chang, Dong-Eun
论文数: 0 引用数: 0
h-index: 0
机构:
Vanderbilt Univ, Nashville, TN 37240 USA Inst Syst Biol, Seattle, WA 98103 USA

DiRuggiero, Jocelyne
论文数: 0 引用数: 0
h-index: 0
机构:
Univ Maryland, College Pk, MD 20742 USA Inst Syst Biol, Seattle, WA 98103 USA

Johnson, Carl H.
论文数: 0 引用数: 0
h-index: 0
机构:
Vanderbilt Univ, Nashville, TN 37240 USA Inst Syst Biol, Seattle, WA 98103 USA

Hood, Leroy
论文数: 0 引用数: 0
h-index: 0
机构:
Inst Syst Biol, Seattle, WA 98103 USA Inst Syst Biol, Seattle, WA 98103 USA

Baliga, Nitin S.
论文数: 0 引用数: 0
h-index: 0
机构:
Inst Syst Biol, Seattle, WA 98103 USA
Univ Washington, Dept Microbiol, Seattle, WA 98195 USA
Univ Washington, Dept Mol & Cellular Biol, Seattle, WA 98195 USA Inst Syst Biol, Seattle, WA 98103 USA
[12]
NeAT:: a toolbox for the analysis of biological networks, clusters, classes and pathways
[J].
Brohee, Sylvain
;
Faust, Karoline
;
Lima-Mendez, Gipsi
;
Sand, Olivier
;
Janky, Rekin's
;
Vanderstocken, Gilles
;
Deville, Yves
;
van Helden, Jacques
.
NUCLEIC ACIDS RESEARCH,
2008, 36
:W444-W451

Brohee, Sylvain
论文数: 0 引用数: 0
h-index: 0
机构:
Univ Libre Bruxelles, Lab Bioinformat Genomes & Reseaux, B-1050 Brussels, Belgium Univ Libre Bruxelles, Lab Bioinformat Genomes & Reseaux, B-1050 Brussels, Belgium

Faust, Karoline
论文数: 0 引用数: 0
h-index: 0
机构:
Univ Libre Bruxelles, Lab Bioinformat Genomes & Reseaux, B-1050 Brussels, Belgium Univ Libre Bruxelles, Lab Bioinformat Genomes & Reseaux, B-1050 Brussels, Belgium

Lima-Mendez, Gipsi
论文数: 0 引用数: 0
h-index: 0
机构:
Univ Libre Bruxelles, Lab Bioinformat Genomes & Reseaux, B-1050 Brussels, Belgium Univ Libre Bruxelles, Lab Bioinformat Genomes & Reseaux, B-1050 Brussels, Belgium

Sand, Olivier
论文数: 0 引用数: 0
h-index: 0
机构:
Univ Libre Bruxelles, Lab Bioinformat Genomes & Reseaux, B-1050 Brussels, Belgium Univ Libre Bruxelles, Lab Bioinformat Genomes & Reseaux, B-1050 Brussels, Belgium

Janky, Rekin's
论文数: 0 引用数: 0
h-index: 0
机构:
Univ Libre Bruxelles, Lab Bioinformat Genomes & Reseaux, B-1050 Brussels, Belgium Univ Libre Bruxelles, Lab Bioinformat Genomes & Reseaux, B-1050 Brussels, Belgium

Vanderstocken, Gilles
论文数: 0 引用数: 0
h-index: 0
机构:
Univ Libre Bruxelles, Lab Bioinformat Genomes & Reseaux, B-1050 Brussels, Belgium Univ Libre Bruxelles, Lab Bioinformat Genomes & Reseaux, B-1050 Brussels, Belgium

Deville, Yves
论文数: 0 引用数: 0
h-index: 0
机构:
Catholic Univ Louvain, Dept Comp Sci & Engn, B-1348 Louvain, Belgium Univ Libre Bruxelles, Lab Bioinformat Genomes & Reseaux, B-1050 Brussels, Belgium

van Helden, Jacques
论文数: 0 引用数: 0
h-index: 0
机构:
Univ Libre Bruxelles, Lab Bioinformat Genomes & Reseaux, B-1050 Brussels, Belgium Univ Libre Bruxelles, Lab Bioinformat Genomes & Reseaux, B-1050 Brussels, Belgium
[13]
Improving promoter prediction Improving promoter prediction for the NNPP2.2 algorithm:: a case study using Escherichia coli DNA sequences
[J].
Burden, S
;
Lin, YX
;
Zhang, R
.
BIOINFORMATICS,
2005, 21 (05)
:601-607

Burden, S
论文数: 0 引用数: 0
h-index: 0
机构:
Univ Wollongong, Dept Appl Math & Stat, Wollongong, NSW 2522, Australia Univ Wollongong, Dept Appl Math & Stat, Wollongong, NSW 2522, Australia

Lin, YX
论文数: 0 引用数: 0
h-index: 0
机构: Univ Wollongong, Dept Appl Math & Stat, Wollongong, NSW 2522, Australia

Zhang, R
论文数: 0 引用数: 0
h-index: 0
机构: Univ Wollongong, Dept Appl Math & Stat, Wollongong, NSW 2522, Australia
[14]
Transcription activation by catabolite activator protein (CAP)
[J].
Busby, S
;
Ebright, RH
.
JOURNAL OF MOLECULAR BIOLOGY,
1999, 293 (02)
:199-213

Busby, S
论文数: 0 引用数: 0
h-index: 0
机构: Howard Hughes Med Inst, Waksman Inst, New Brunswick, NJ 08855 USA

Ebright, RH
论文数: 0 引用数: 0
h-index: 0
机构: Howard Hughes Med Inst, Waksman Inst, New Brunswick, NJ 08855 USA
[15]
TRANSCRIPTION ACTIVATION BY THE ESCHERICHIA-COLI CYCLIC-AMP RECEPTOR PROTEIN - RECEPTORS BOUND IN TANDEM AT PROMOTERS CAN INTERACT SYNERGISTICALLY
[J].
BUSBY, S
;
WEST, D
;
LAWES, M
;
WEBSTER, C
;
ISHIHAMA, A
;
KOLB, A
.
JOURNAL OF MOLECULAR BIOLOGY,
1994, 241 (03)
:341-352

BUSBY, S
论文数: 0 引用数: 0
h-index: 0
机构: NATL INST GENET,DEPT MOLEC GENET,MISHIMA,SHIZUOKA 411,JAPAN

WEST, D
论文数: 0 引用数: 0
h-index: 0
机构: NATL INST GENET,DEPT MOLEC GENET,MISHIMA,SHIZUOKA 411,JAPAN

LAWES, M
论文数: 0 引用数: 0
h-index: 0
机构: NATL INST GENET,DEPT MOLEC GENET,MISHIMA,SHIZUOKA 411,JAPAN

WEBSTER, C
论文数: 0 引用数: 0
h-index: 0
机构: NATL INST GENET,DEPT MOLEC GENET,MISHIMA,SHIZUOKA 411,JAPAN

ISHIHAMA, A
论文数: 0 引用数: 0
h-index: 0
机构: NATL INST GENET,DEPT MOLEC GENET,MISHIMA,SHIZUOKA 411,JAPAN

KOLB, A
论文数: 0 引用数: 0
h-index: 0
机构: NATL INST GENET,DEPT MOLEC GENET,MISHIMA,SHIZUOKA 411,JAPAN
[16]
An analysis of the positional distribution of DNA motifs in promoter regions and its biological relevance
[J].
Casimiro, Ana C.
;
Vinga, Susana
;
Freitas, Ana T.
;
Oliveira, Arlindo L.
.
BMC BIOINFORMATICS,
2008, 9 (1)

Casimiro, Ana C.
论文数: 0 引用数: 0
h-index: 0
机构:
INESC, ID IST, P-1000 Lisbon, Portugal INESC, ID IST, P-1000 Lisbon, Portugal

Vinga, Susana
论文数: 0 引用数: 0
h-index: 0
机构:
INESC, ID IST, P-1000 Lisbon, Portugal
Univ Nova Lisboa, FCM, P-1169056 Lisbon, Portugal INESC, ID IST, P-1000 Lisbon, Portugal

Freitas, Ana T.
论文数: 0 引用数: 0
h-index: 0
机构:
INESC, ID IST, P-1000 Lisbon, Portugal INESC, ID IST, P-1000 Lisbon, Portugal

Oliveira, Arlindo L.
论文数: 0 引用数: 0
h-index: 0
机构:
INESC, ID IST, P-1000 Lisbon, Portugal INESC, ID IST, P-1000 Lisbon, Portugal
[17]
GeConT: gene context analysis
[J].
Ciria, R
;
Abreu-Goodger, C
;
Morett, E
;
Merino, E
.
BIOINFORMATICS,
2004, 20 (14)
:2307-2308

Ciria, R
论文数: 0 引用数: 0
h-index: 0
机构:
Univ Nacl Autonoma Mexico, Dept Biol Celular & Biocatalisis, Inst Biotecnol, Cuernavaca 62210, Morelos, Mexico Univ Nacl Autonoma Mexico, Dept Biol Celular & Biocatalisis, Inst Biotecnol, Cuernavaca 62210, Morelos, Mexico

Abreu-Goodger, C
论文数: 0 引用数: 0
h-index: 0
机构:
Univ Nacl Autonoma Mexico, Dept Biol Celular & Biocatalisis, Inst Biotecnol, Cuernavaca 62210, Morelos, Mexico Univ Nacl Autonoma Mexico, Dept Biol Celular & Biocatalisis, Inst Biotecnol, Cuernavaca 62210, Morelos, Mexico

Morett, E
论文数: 0 引用数: 0
h-index: 0
机构:
Univ Nacl Autonoma Mexico, Dept Biol Celular & Biocatalisis, Inst Biotecnol, Cuernavaca 62210, Morelos, Mexico Univ Nacl Autonoma Mexico, Dept Biol Celular & Biocatalisis, Inst Biotecnol, Cuernavaca 62210, Morelos, Mexico

Merino, E
论文数: 0 引用数: 0
h-index: 0
机构:
Univ Nacl Autonoma Mexico, Dept Biol Celular & Biocatalisis, Inst Biotecnol, Cuernavaca 62210, Morelos, Mexico Univ Nacl Autonoma Mexico, Dept Biol Celular & Biocatalisis, Inst Biotecnol, Cuernavaca 62210, Morelos, Mexico
[18]
CONTROL SITE LOCATION AND TRANSCRIPTIONAL REGULATION IN ESCHERICHIA-COLI
[J].
COLLADOVIDES, J
;
MAGASANIK, B
;
GRALLA, JD
.
MICROBIOLOGICAL REVIEWS,
1991, 55 (03)
:371-394

COLLADOVIDES, J
论文数: 0 引用数: 0
h-index: 0
机构: UNIV CALIF LOS ANGELES,DEPT CHEM & BIOCHEM,LOS ANGELES,CA 90024

MAGASANIK, B
论文数: 0 引用数: 0
h-index: 0
机构: UNIV CALIF LOS ANGELES,DEPT CHEM & BIOCHEM,LOS ANGELES,CA 90024

GRALLA, JD
论文数: 0 引用数: 0
h-index: 0
机构: UNIV CALIF LOS ANGELES,DEPT CHEM & BIOCHEM,LOS ANGELES,CA 90024
[19]
Programming gene expression with combinatorial promoters
[J].
Cox, Robert Sidney, III
;
Surette, Michael G.
;
Elowitz, Michael B.
.
MOLECULAR SYSTEMS BIOLOGY,
2007, 3 (1)

Cox, Robert Sidney, III
论文数: 0 引用数: 0
h-index: 0
机构:
CALTECH, Div Biol, Pasadena, CA 91125 USA CALTECH, Div Biol, Pasadena, CA 91125 USA

Surette, Michael G.
论文数: 0 引用数: 0
h-index: 0
机构:
Univ Calgary, Dept Microbiol & Infect Dis, Calgary, AB, Canada CALTECH, Div Biol, Pasadena, CA 91125 USA

Elowitz, Michael B.
论文数: 0 引用数: 0
h-index: 0
机构:
CALTECH, Div Biol, Pasadena, CA 91125 USA
CALTECH, Dept Appl Phys, Pasadena, CA 91125 USA CALTECH, Div Biol, Pasadena, CA 91125 USA
[20]
Using RSAT oligo-analysis and dyad-analysis tools to discover regulatory signals in nucleic sequences
[J].
Defrance, Matthieu
;
Janky, Rekin's
;
Sand, Olivier
;
van Helden, Jacques
.
NATURE PROTOCOLS,
2008, 3 (10)
:1589-1603

Defrance, Matthieu
论文数: 0 引用数: 0
h-index: 0
机构:
Univ Libre Bruxelles, Lab Bioinformat Genomes & Reseaux BiGRe, B-1050 Brussels, Belgium Univ Libre Bruxelles, Lab Bioinformat Genomes & Reseaux BiGRe, B-1050 Brussels, Belgium

Janky, Rekin's
论文数: 0 引用数: 0
h-index: 0
机构:
Univ Libre Bruxelles, Lab Bioinformat Genomes & Reseaux BiGRe, B-1050 Brussels, Belgium Univ Libre Bruxelles, Lab Bioinformat Genomes & Reseaux BiGRe, B-1050 Brussels, Belgium

Sand, Olivier
论文数: 0 引用数: 0
h-index: 0
机构:
Univ Libre Bruxelles, Lab Bioinformat Genomes & Reseaux BiGRe, B-1050 Brussels, Belgium Univ Libre Bruxelles, Lab Bioinformat Genomes & Reseaux BiGRe, B-1050 Brussels, Belgium

van Helden, Jacques
论文数: 0 引用数: 0
h-index: 0
机构:
Univ Libre Bruxelles, Lab Bioinformat Genomes & Reseaux BiGRe, B-1050 Brussels, Belgium Univ Libre Bruxelles, Lab Bioinformat Genomes & Reseaux BiGRe, B-1050 Brussels, Belgium