Mass spectrometry of RNA

被引:47
作者
Thomas, B [1 ]
Akoulitchev, AV [1 ]
机构
[1] Univ Oxford, Sir William Dunn Sch Pathol, Cent Prote Facil, Oxford OX1 3RE, England
关键词
D O I
10.1016/j.tibs.2006.01.004
中图分类号
Q5 [生物化学]; Q7 [分子生物学];
学科分类号
071010 ; 081704 ;
摘要
A complex population of non-coding RNAs is present in higher organisms. These RNAs have a multitude of functions and execute control over gene expression through various, often poorly understood, mechanisms. At present, the identification and analysis of functional regulatory RNAs and disparate ribonucleoprotein complexes remain an experimental challenge for biologists. They require specially designed approaches and techniques in genomics and RNA biochemistry. Developments in technologies based on mass spectrometry could offer sensitive and efficient solutions to analysis of the sequence, structure, modification and composition of RNA.
引用
收藏
页码:173 / 181
页数:9
相关论文
共 89 条
[1]   A novel partial modification at C2501 in Escherichia coli 23S ribosomal RNA [J].
Andersen, TE ;
Porse, BT ;
Kirpekar, F .
RNA, 2004, 10 (06) :907-913
[2]   Enhanced detection of oligonucleotides in UV MALDI MS using the tetraamine spermine as a matrix additive [J].
Asara, JM ;
Allison, J .
ANALYTICAL CHEMISTRY, 1999, 71 (14) :2866-2870
[3]   Evidence for binding of dirhodium bis-acetate units to adjacent GG and AA sites on single-stranded DNA [J].
Asara, JM ;
Hess, JS ;
Lozada, E ;
Dunbar, KR ;
Allison, J .
JOURNAL OF THE AMERICAN CHEMICAL SOCIETY, 2000, 122 (01) :8-13
[4]   RNA SEQUENCING USING FLUORESCENT-LABELED DIDEOXYNUCLEOTIDES AND AUTOMATED FLUORESCENCE DETECTION [J].
BAUER, GJ .
NUCLEIC ACIDS RESEARCH, 1990, 18 (04) :879-884
[5]   RNA silencing - Diced defence [J].
Baulcombe, D .
NATURE, 2001, 409 (6818) :295-296
[6]   Metabolomics applications of FT-ICR mass spectrometry [J].
Brown, SC ;
Kruppa, G ;
Dasseux, JL .
MASS SPECTROMETRY REVIEWS, 2005, 24 (02) :223-231
[7]   The transcriptional landscape of the mammalian genome [J].
Carninci, P ;
Kasukawa, T ;
Katayama, S ;
Gough, J ;
Frith, MC ;
Maeda, N ;
Oyama, R ;
Ravasi, T ;
Lenhard, B ;
Wells, C ;
Kodzius, R ;
Shimokawa, K ;
Bajic, VB ;
Brenner, SE ;
Batalov, S ;
Forrest, ARR ;
Zavolan, M ;
Davis, MJ ;
Wilming, LG ;
Aidinis, V ;
Allen, JE ;
Ambesi-Impiombato, X ;
Apweiler, R ;
Aturaliya, RN ;
Bailey, TL ;
Bansal, M ;
Baxter, L ;
Beisel, KW ;
Bersano, T ;
Bono, H ;
Chalk, AM ;
Chiu, KP ;
Choudhary, V ;
Christoffels, A ;
Clutterbuck, DR ;
Crowe, ML ;
Dalla, E ;
Dalrymple, BP ;
de Bono, B ;
Della Gatta, G ;
di Bernardo, D ;
Down, T ;
Engstrom, P ;
Fagiolini, M ;
Faulkner, G ;
Fletcher, CF ;
Fukushima, T ;
Furuno, M ;
Futaki, S ;
Gariboldi, M .
SCIENCE, 2005, 309 (5740) :1559-1563
[8]   Domains in gene silencing and cell differentiation proteins: the novel PAZ domain and redefinition of the Piwi domain [J].
Cerutti, L ;
Mian, N ;
Bateman, A .
TRENDS IN BIOCHEMICAL SCIENCES, 2000, 25 (10) :481-482
[9]   ANALYSIS OF OLIGODEOXYNUCLEOTIDES BY NEGATIVE-ION MATRIX-ASSISTED LASER-DESORPTION MASS-SPECTROMETRY [J].
CURRIE, GJ ;
YATES, JR .
JOURNAL OF THE AMERICAN SOCIETY FOR MASS SPECTROMETRY, 1993, 4 (12) :955-963
[10]   5-methoxysalicylic acid and spermine: A new matrix for the matrix-assisted laser desorption/ionization mass spectrometry analysis of oligonucleotides [J].
Distler, AM ;
Allison, J .
JOURNAL OF THE AMERICAN SOCIETY FOR MASS SPECTROMETRY, 2001, 12 (04) :456-462