Mimivirus and the emerging concept of "giant" virus

被引:124
作者
Claverie, JM
Ogata, H
Audic, S
Abergel, C
Suhre, K
Fournier, PE
机构
[1] CNRS, UPR 2589, IBSM, F-13288 Marseille 9, France
[2] Univ Mediterranee, Fac Med, F-13385 Marseille 5, France
关键词
large DNA viruses; Mimivirus; evolution; genome;
D O I
10.1016/j.virusres.2006.01.008
中图分类号
Q93 [微生物学];
学科分类号
071005 ; 100705 ;
摘要
The recently discovered Acanthamoeba polyphaga Mimivirus is the largest known DNA virus. Its particle size (750nm), genome length (1.2 million bp) and large gene repertoire (911 protein coding genes) blur the established boundaries between viruses and parasitic cellular organisms. In addition, the analysis of its genome sequence identified many types of genes never before encountered in a virus, including aminoacyl-tRNA synthetases and other central components of the translation machinery previously thought to be the signature of cellular organisms. In this article, we examine how the finding of such a giant virus might durably influence the way we look at microbial biodiversity, and lead us to revise the classification of microbial domains and life forms. We propose to introduce the word "girus" to recognize the intermediate status of these giant DNA viruses, the genome complexity of which makes them closer to small parasitic prokaryotes than to regular viruses. (c) 2006 Elsevier B.V. All rights reserved.
引用
收藏
页码:133 / 144
页数:12
相关论文
共 64 条
[1]   Mimivirus TyrRS: preliminary structural and functional characterization of the first amino-acyl tRNA synthetase found in a virus [J].
Abergel, C ;
Chenivesse, S ;
Byrne, D ;
Suhre, K ;
Arondel, V ;
Claverie, JM .
ACTA CRYSTALLOGRAPHICA SECTION F-STRUCTURAL BIOLOGY COMMUNICATIONS, 2005, 61 :212-215
[2]   Insights into assembly from structural analysis of bacteriophage PRD1 [J].
Abrescia, NGA ;
Cockburn, JJB ;
Grimes, JM ;
Sutton, GC ;
Diprose, JM ;
Butcher, SJ ;
Fuller, SD ;
Martín, CS ;
Burnett, RM ;
Stuart, DI ;
Bamford, DH ;
Bamford, JKH .
NATURE, 2004, 432 (7013) :68-74
[3]   Gapped BLAST and PSI-BLAST: a new generation of protein database search programs [J].
Altschul, SF ;
Madden, TL ;
Schaffer, AA ;
Zhang, JH ;
Zhang, Z ;
Miller, W ;
Lipman, DJ .
NUCLEIC ACIDS RESEARCH, 1997, 25 (17) :3389-3402
[4]   Pseudogenes, junk DNA, and the dynamics of Rickettsia genomes [J].
Andersson, JO ;
Andersson, SGE .
MOLECULAR BIOLOGY AND EVOLUTION, 2001, 18 (05) :829-839
[5]   Characterization of different viruses infecting the marine harmful algal bloom species Phaeocystis globosa [J].
Baudoux, AC ;
Brussaard, CPD .
VIROLOGY, 2005, 341 (01) :80-90
[6]   Characterization of miraivirus DNA topoisomerase IB suggests horizontal gene transfer between eukaryal viruses and bacteria [J].
Benarroch, D ;
Claverie, JM ;
Raoult, D ;
Shuman, S .
JOURNAL OF VIROLOGY, 2006, 80 (01) :314-321
[7]   OBJECTIVE COMPARISON OF EXON AND INTRON SEQUENCES BY THE MEAN OF TWO-DIMENSIONAL DATA-ANALYSIS METHODS [J].
BOUGUELERET, L ;
TEKAIA, F ;
SAUVAGET, I ;
CLAVERIE, JM .
NUCLEIC ACIDS RESEARCH, 1988, 16 (05) :1729-1738
[8]   Diversity and population structure of a near-shore marine-sediment viral community [J].
Breitbart, M ;
Felts, B ;
Kelley, S ;
Mahaffy, JM ;
Nulton, J ;
Salamon, P ;
Rohwer, F .
PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES, 2004, 271 (1539) :565-574
[9]   Metagenomic analyses of an uncultured viral community from human feces [J].
Breitbart, M ;
Hewson, I ;
Felts, B ;
Mahaffy, JM ;
Nulton, J ;
Salamon, P ;
Rohwer, F .
JOURNAL OF BACTERIOLOGY, 2003, 185 (20) :6220-6223
[10]   Genomic analysis of uncultured marine viral communities [J].
Breitbart, M ;
Salamon, P ;
Andresen, B ;
Mahaffy, JM ;
Segall, AM ;
Mead, D ;
Azam, F ;
Rohwer, F .
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 2002, 99 (22) :14250-14255