Immunoprecipitation of DNA-protein complexes cross-linked by cis-diamminedichloroplatinum

被引:13
作者
Chichiarelli, S
Coppari, S
Turano, C
Eufemi, M
Altieri, F
Ferraro, A [1 ]
机构
[1] Univ Roma La Sapienza, Ist Pasteur Fdn Cenci Bolognetti, Dipartimento Sci Biochim Alessandro Rossi Fanelli, I-00185 Rome, Italy
[2] Univ Roma La Sapienza, CNR, Ctr Biol Mol, I-00185 Rome, Italy
关键词
immunoprecipitation; nuclear proteins; cross-linking; cis-diamminedichloroplatinum II;
D O I
10.1006/abio.2001.5543
中图分类号
Q5 [生物化学];
学科分类号
071010 ; 081704 ;
摘要
For the study of in vitro and in vivo DNA-protein interactions, cross-linking reactions driven by UV or formaldehyde have been frequently used, followed by standard protocols of immunoprecipitation and analysis of the DNA isolated from the complexes. Here we present a basically modified method to analyze the DNA-protein cross-linked complexes obtained by an alternative cross-linking reagent. The innovations presented here include cross-linking by cis-diamminedichloroplatinum 11, a fast method to isolate DNA-protein complexes using gel-filtration chromatography, and a modified procedure to obtain specific immunocomplexes that can be analyzed either for DNA or for protein content. The application of this method to two nuclear proteins from chicken liver nuclei is described. (C) 2002 Elsevier Science (USA).
引用
收藏
页码:224 / 229
页数:6
相关论文
共 25 条
[1]   Purification of a 60-kDa protein from chicken liver associated with the internal nuclear matrix and closely related to carboxylesterases [J].
Altieri, F ;
Maras, B ;
Ferraro, A ;
Turano, C .
EUROPEAN JOURNAL OF BIOCHEMISTRY, 1996, 236 (03) :806-813
[2]   PURIFICATION OF A 57KDA NUCLEAR MATRIX PROTEIN ASSOCIATED WITH THIOL-PROTEIN-DISULFIDE OXIDOREDUCTASE AND PHOSPHOLIPASE-C ACTIVITIES [J].
ALTIERI, F ;
MARAS, B ;
EUFEMI, M ;
FERRARO, A ;
TURANO, C .
BIOCHEMICAL AND BIOPHYSICAL RESEARCH COMMUNICATIONS, 1993, 194 (03) :992-1000
[3]   NUCLEI FROM RAT LIVER - ISOLATION METHOD THAT COMBINES PURITY WITH HIGH YIELD [J].
BLOBEL, G ;
POTTER, VR .
SCIENCE, 1966, 154 (3757) :1662-&
[4]  
Boyer LA, 2000, BIOESSAYS, V22, P666, DOI 10.1002/1521-1878(200007)22:7<666::AID-BIES9>3.3.CO
[5]  
2-P
[6]   INVIVO EFFECTS OF CIS-DIAMMINEDICHLOROPLATINUM(II) AND TRANS-DIAMMINEDICHLOROPLATINUM(II) ON SV40 CHROMOSOMES - DIFFERENTIAL REPAIR, DNA PROTEIN CROSS-LINKING, AND INHIBITION OF REPLICATION [J].
CICCARELLI, RB ;
SOLOMON, MJ ;
VARSHAVSKY, A ;
LIPPARD, SJ .
BIOCHEMISTRY, 1985, 24 (26) :7533-7540
[7]   The genomic sequences bound to special AT-rich sequence-binding protein 1 (SATB1) in vivo in Jurkat T cells are tightly associated with the nuclear matrix at the bases of the chromatin loops [J].
de Belle, I ;
Cai, ST ;
Kohwi-Shigematsu, T .
JOURNAL OF CELL BIOLOGY, 1998, 141 (02) :335-348
[8]  
Ferraro A, 1996, J CELL BIOCHEM, V62, P495
[9]   THE PRESENCE OF N-GLYCOSYLATED PROTEINS IN CELL-NUCLEI [J].
FERRARO, A ;
GRANDI, P ;
EUFEMI, M ;
ALTIERI, F ;
CERVONI, L ;
TURANO, C .
BIOCHEMICAL AND BIOPHYSICAL RESEARCH COMMUNICATIONS, 1991, 178 (03) :1365-1370
[10]  
Ferraro A, 1999, J CELL BIOCHEM, V72, P528, DOI 10.1002/(SICI)1097-4644(19990315)72:4<528::AID-JCB8>3.0.CO