Single nucleotide polymorphisms for integrative mapping in the Turkey (Meleagris gallopavo)

被引:11
作者
Reed, KM [1 ]
Hall, MK [1 ]
Chaves, LD [1 ]
Knutson, TP [1 ]
机构
[1] Univ Minnesota, Dept Vet & Biomed Sci, St Paul, MN 55108 USA
关键词
Turkey; genetic linkage map; single nucleotide polymorphism;
D O I
10.1080/10495390500461112
中图分类号
S8 [畜牧、 动物医学、狩猎、蚕、蜂];
学科分类号
0905 ;
摘要
When multiple genetic maps exist for a species, integration of these maps requires a set of common markers be genotyped across the individual mapping populations. In the turkey, three genetic maps based on separate mapping populations are available. In this study, SNP-based markers were developed for integrating the cDNA/RFLP-based map (1) with microsatellite markers of the second-generation turkey genome map (2). Forty-eight primer sets were designed and tested and 33 (69%) correctly amplified turkey genomic DNA by PCR. Putative SNPs were detected in 20 (61%) of the amplified gene fragments, and 10 SNP markers were subsequently genotyped by PCR/RFLP for segregation analysis. Eight SNP markers were incorporated into the turkey genetic map.
引用
收藏
页码:73 / 80
页数:8
相关论文
共 11 条
[1]   Preliminary linkage map of the Turkey (Meleagris gallopavo) based on microsatellite markers [J].
Burt, DW ;
Morrice, DR ;
Sewalem, A ;
Smith, J ;
Paton, IR ;
Smith, EJ ;
Bentley, J ;
Hocking, PM .
ANIMAL GENETICS, 2003, 34 (06) :399-409
[2]  
Chaves LD, 2005, GENOME, V48, P12, DOI [10.1139/g04-088, 10.1139/G04-088]
[3]   Myosin light chain genes in the turkey (Meleagris gallopavo) [J].
Chaves, LD ;
Ostroski, BJ ;
Reed, KM .
CYTOGENETIC AND GENOME RESEARCH, 2003, 102 (1-4) :340-346
[4]  
GARBE JR, 2003, LOCUSMAP USER MANUAL
[5]  
Harry DE, 2003, GENOME, V46, P914, DOI [10.1139/g03-042, 10.1139/G03-042]
[6]   Sequence and comparative analysis of the chicken genome provide unique perspectives on vertebrate evolution [J].
Hillier, LW ;
Miller, W ;
Birney, E ;
Warren, W ;
Hardison, RC ;
Ponting, CP ;
Bork, P ;
Burt, DW ;
Groenen, MAM ;
Delany, ME ;
Dodgson, JB ;
Chinwalla, AT ;
Cliften, PF ;
Clifton, SW ;
Delehaunty, KD ;
Fronick, C ;
Fulton, RS ;
Graves, TA ;
Kremitzki, C ;
Layman, D ;
Magrini, V ;
McPherson, JD ;
Miner, TL ;
Minx, P ;
Nash, WE ;
Nhan, MN ;
Nelson, JO ;
Oddy, LG ;
Pohl, CS ;
Randall-Maher, J ;
Smith, SM ;
Wallis, JW ;
Yang, SP ;
Romanov, MN ;
Rondelli, CM ;
Paton, B ;
Smith, J ;
Morrice, D ;
Daniels, L ;
Tempest, HG ;
Robertson, L ;
Masabanda, JS ;
Griffin, DK ;
Vignal, A ;
Fillon, V ;
Jacobbson, L ;
Kerje, S ;
Andersson, L ;
Crooijmans, RPM ;
Aerts, J .
NATURE, 2004, 432 (7018) :695-716
[7]   A comparative genetic map of the turkey genome [J].
Reed, KM ;
Chaves, LD ;
Hall, MK ;
Knutson, TP ;
Harry, DE .
CYTOGENETIC AND GENOME RESEARCH, 2005, 111 (02) :118-127
[8]   Allelic variation and genetic linkage of avian microsatellites in a new turkey population for genetic mapping [J].
Reed, KM ;
Chaves, LD ;
Garbe, JR ;
Da, Y ;
Harry, DE .
CYTOGENETIC AND GENOME RESEARCH, 2003, 102 (1-4) :331-339
[9]   High-throughput polymorphism screening and genotyping with high-density oligonucleotide arrays [J].
Sapolsky, RJ ;
Hsie, L ;
Berno, A ;
Ghandour, G ;
Mittmann, M ;
Fan, JB .
GENETIC ANALYSIS-BIOMOLECULAR ENGINEERING, 1999, 14 (5-6) :187-192
[10]   Linkage mapping bovine EST-based SNP [J].
Snelling, WM ;
Casas, E ;
Stone, RT ;
Keele, JW ;
Harhay, GP ;
Bennett, GL ;
Smith, TPL .
BMC GENOMICS, 2005, 6 (1)