Molecular dating of caprines using ancient DNA sequences of Myotragus balearicus, an extinct endemic Balearic mammal -: art. no. 70

被引:66
作者
Lalueza-Fox, C
Castresana, J
Sampietro, L
Marqués-Bonet, T
Alcover, JA
Bertranpetit, J
机构
[1] Univ Pompeu Fabra, Fac Ciencies Salut & Vida, Unitat Biol Evolut, Barcelona 08003, Spain
[2] Univ Barcelona, Fac Biol, Dept Biol Anim, Unitat Antropol, E-08028 Barcelona, Spain
[3] CSIC, Inst Biol Mol Barcelona, Dept Physiol & Mol Biodivers, ES-08034 Barcelona, Spain
[4] UIB, CSIC, Inst Mediterrani Estudis Avancats Illes Balears, Ciutat De Mallorca 07071, Spain
关键词
D O I
10.1186/1471-2148-5-70
中图分类号
Q [生物科学];
学科分类号
07 ; 0710 ; 09 ;
摘要
Background: Myotragus balearicus was an endemic bovid from the Balearic Islands ( Western Mediterranean) that became extinct around 6,000- 4,000 years ago. The Myotragus evolutionary lineage became isolated in the islands most probably at the end of the Messinian crisis, when the desiccation of the Mediterranean ended, in a geological date established at 5.35 Mya. Thus, the sequences of Myotragus could be very valuable for calibrating the mammalian mitochondrial DNA clock and, in particular, the tree of the Caprinae subfamily, to which Myotragus belongs. Results: We have retrieved the complete mitochondrial cytochrome b gene ( 1,143 base pairs), plus fragments of the mitochondrial 12S gene and the nuclear 28S rDNA multi-copy gene from a well preserved Myotragus subfossil bone. The best resolved phylogenetic trees, obtained with the cytochrome b gene, placed Myotragus in a position basal to the Ovis group. Using the calibration provided by the isolation of Balearic Islands, we calculated that the initial radiation of caprines can be dated at 6.2 +/- 0.4 Mya. In addition, alpine and southern chamois, considered until recently the same species, split around 1.6 +/- 0.3 Mya, indicating that the two chamois species have been separated much longer than previously thought. Conclusion: Since there are almost no extant endemic mammals in Mediterranean islands, the sequence of the extinct Balearic endemic Myotragus has been crucial for allowing us to use the Messinian crisis calibration point for dating the caprines phylogenetic tree.
引用
收藏
页数:11
相关论文
共 48 条
[11]   Complete mitochondrial genome sequences of two extinct moas clarify ratite evolution [J].
Cooper, A ;
Lalueza-Fox, C ;
Anderson, S ;
Rambaut, A ;
Austin, J ;
Ward, R .
NATURE, 2001, 409 (6821) :704-707
[12]   Deep roots of the Messinian salinity crisis [J].
Duggen, S ;
Hoernle, K ;
van den Bogaard, P ;
Rüpke, L ;
Morgan, JP .
NATURE, 2003, 422 (6932) :602-606
[13]   A cladistic analysis of mitochondrial ribosomal DNA from the bovidae [J].
Gatesy, J ;
Amato, G ;
Vrba, E ;
Schaller, G ;
DeSalle, R .
MOLECULAR PHYLOGENETICS AND EVOLUTION, 1997, 7 (03) :303-319
[14]  
Gentry A.W., 1994, Historical Biology, V7, P115
[15]   Estimation of divergence times for major lineages of primate species [J].
Glazko, GV ;
Nei, M .
MOLECULAR BIOLOGY AND EVOLUTION, 2003, 20 (03) :424-434
[16]   VARIATION AMONG HUMAN 28S RIBOSOMAL-RNA GENES [J].
GONZALEZ, IL ;
GORSKI, JL ;
CAMPEN, TJ ;
DORNEY, DJ ;
ERICKSON, JM ;
SYLVESTER, JE ;
SCHMICKEL, RD .
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 1985, 82 (22) :7666-7670
[17]   Nuclear DNA sequences from late Pleistocene megafauna [J].
Greenwood, AD ;
Capelli, C ;
Possnert, G ;
Pääbo, S .
MOLECULAR BIOLOGY AND EVOLUTION, 1999, 16 (11) :1466-1473
[18]   Phylogenetics of the Caprinae based on cytochrome b sequence [J].
Groves, P ;
Shields, GF .
MOLECULAR PHYLOGENETICS AND EVOLUTION, 1996, 5 (03) :467-476
[19]   A simple, fast, and accurate algorithm to estimate large phylogenies by maximum likelihood [J].
Guindon, S ;
Gascuel, O .
SYSTEMATIC BIOLOGY, 2003, 52 (05) :696-704
[20]  
Hammer Sabine, 1995, Acta Theriologica Supplement, V3, P145