Land-use change and soil type are drivers of fungal and archaeal communities in the Pampa biome

被引:39
作者
Lupatini, Manoeli [1 ]
Seminoti Jacques, Rodrigo Josemar [1 ]
Antoniolli, Zaida Ines [1 ]
Ahmad Suleiman, Afnan Khalil [2 ]
Fulthorpe, Roberta R. [3 ]
Wuerdig Roesch, Luiz Fernando [2 ]
机构
[1] Univ Fed Santa Maria, Dept Solos, BR-97105900 Santa Maria, RS, Brazil
[2] Univ Fed Pampa, BR-97300000 Sao Gabriel, RS, Brazil
[3] Univ Toronto Scarborough, Dept Phys & Environm Sci, Toronto, ON M1C 1A4, Canada
关键词
Intergenic spacer analysis; Microbial biomass; Metabolic quotient; Soil microbial core; MICROBIAL COMMUNITY; AFFORESTATION ALTERS; ENZYME-ACTIVITIES; BACTERIAL; DIVERSITY; MICROORGANISMS; HABITAT;
D O I
10.1007/s11274-012-1174-3
中图分类号
Q81 [生物工程学(生物技术)]; Q93 [微生物学];
学科分类号
071005 ; 0836 ; 090102 ; 100705 ;
摘要
The current study aimed to test the hypothesis that both land-use change and soil type are responsible for the major changes in the fungal and archaeal community structure and functioning of the soil microbial community in Brazilian Pampa biome. Soil samples were collected at sites with different land-uses (native grassland, native forest, Eucalyptus and Acacia plantation, soybean and watermelon field) and in a typical toposequence in Pampa biome formed by Paleudult, Albaqualf and alluvial soils. The structure of soil microbial community (archaeal and fungal) was evaluated by ribosomal intergenic spacer analysis and soil functional capabilities were measured by microbial biomass carbon and metabolic quotient. We detected different patterns in microbial community driven by land-use change and soil type, showing that both factors are significant drivers of fungal and archaeal community structure and biomass and microbial activity. Fungal community structure was more affected by land-use and archaeal community was more affected by soil type. Irrespective of the land-use or soil type, a large percentage of operational taxonomic unit were shared among the soils. We accepted the hypothesis that both land-use change and soil type are drivers of archaeal and fungal community structure and soil functional capabilities. Moreover, we also suggest the existence of a soil microbial core.
引用
收藏
页码:223 / 233
页数:11
相关论文
共 49 条
[1]   Resistance, resilience, and redundancy in microbial communities [J].
Allison, Steven D. ;
Martiny, Jennifer B. H. .
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 2008, 105 :11512-11519
[2]  
[Anonymous], 2006, Primer
[3]  
[Anonymous], 2012, Molecular Cloning: A Laboratory Manual
[4]   Environmental and spatial characterisation of bacterial community composition in soil to inform sampling strategies [J].
Baker, Kate L. ;
Langenheder, Silke ;
Nicol, Graeme W. ;
Ricketts, Dean ;
Killham, Kenneth ;
Campbell, Colin D. ;
Prosser, James I. .
SOIL BIOLOGY & BIOCHEMISTRY, 2009, 41 (11) :2292-2298
[5]   Afforestation Alters the Composition of Functional Genes in Soil and Biogeochemical Processes in South American Grasslands [J].
Berthrong, Sean T. ;
Schadt, Christopher W. ;
Pineiro, Gervasio ;
Jackson, Robert B. .
APPLIED AND ENVIRONMENTAL MICROBIOLOGY, 2009, 75 (19) :6240-6248
[6]   Long-term land use effects on soil microbial community structure and function [J].
Bissett, Andrew ;
Richardson, Alan E. ;
Baker, Geoff ;
Thrall, Peter H. .
APPLIED SOIL ECOLOGY, 2011, 51 :66-78
[7]   Molecular microbial diversity in soils from eastern Amazonia: Evidence for unusual microorganisms and microbial population shifts associated with deforestation [J].
Borneman, J ;
Triplett, EW .
APPLIED AND ENVIRONMENTAL MICROBIOLOGY, 1997, 63 (07) :2647-2653
[8]  
Brazilian Institute of Geography and Statistics - IBGE, 2004, MAP VEG BRAZ MAP BIO
[9]   Soil moisture is the major factor influencing microbial community structure and enzyme activities across seven biogeoclimatic zones in western Canada [J].
Brockett, Beth F. T. ;
Prescott, Cindy E. ;
Grayston, Sue J. .
SOIL BIOLOGY & BIOCHEMISTRY, 2012, 44 (01) :9-20
[10]   QIIME allows analysis of high-throughput community sequencing data [J].
Caporaso, J. Gregory ;
Kuczynski, Justin ;
Stombaugh, Jesse ;
Bittinger, Kyle ;
Bushman, Frederic D. ;
Costello, Elizabeth K. ;
Fierer, Noah ;
Pena, Antonio Gonzalez ;
Goodrich, Julia K. ;
Gordon, Jeffrey I. ;
Huttley, Gavin A. ;
Kelley, Scott T. ;
Knights, Dan ;
Koenig, Jeremy E. ;
Ley, Ruth E. ;
Lozupone, Catherine A. ;
McDonald, Daniel ;
Muegge, Brian D. ;
Pirrung, Meg ;
Reeder, Jens ;
Sevinsky, Joel R. ;
Tumbaugh, Peter J. ;
Walters, William A. ;
Widmann, Jeremy ;
Yatsunenko, Tanya ;
Zaneveld, Jesse ;
Knight, Rob .
NATURE METHODS, 2010, 7 (05) :335-336