共 60 条
Mass spectrometric analysis of cross-linking sites for the structure of proteins and protein complexes
被引:64
作者:

Lee, Young Jin
论文数: 0 引用数: 0
h-index: 0
机构:
Univ Calif Davis, Genome Ctr, Davis, CA 95616 USA Univ Calif Davis, Genome Ctr, Davis, CA 95616 USA
机构:
[1] Univ Calif Davis, Genome Ctr, Davis, CA 95616 USA
关键词:
D O I:
10.1039/b801810c
中图分类号:
Q5 [生物化学];
Q7 [分子生物学];
学科分类号:
071010 ;
081704 ;
摘要:
Mass spectrometry has become the method of choice to detect and quantify the minute amounts of proteins at the genomic scale. It has recently been adopted for three dimensional structure analyses of proteins or protein complexes by chemically cross-linking their intact forms and analyzing the cross-linked pieces after digestion. This highlight provides an overview of the technology with a focus on advances in the last two years. This cross-linking mass spectrometry has a great potential to become a powerful tool to supplement current X-ray and NMR method of protein structure analysis.
引用
收藏
页码:816 / 823
页数:8
相关论文
共 60 条
[1]
Informatics strategies for large-scale novel cross-linking analysis
[J].
Anderson, Gordon A.
;
Tolic, Nikola
;
Tang, Xiaoting
;
Zheng, Chunxiang
;
Bruce, James E.
.
JOURNAL OF PROTEOME RESEARCH,
2007, 6 (09)
:3412-3421

Anderson, Gordon A.
论文数: 0 引用数: 0
h-index: 0
机构: Washington State Univ, Dept Chem, Pullman, WA 99164 USA

Tolic, Nikola
论文数: 0 引用数: 0
h-index: 0
机构: Washington State Univ, Dept Chem, Pullman, WA 99164 USA

Tang, Xiaoting
论文数: 0 引用数: 0
h-index: 0
机构: Washington State Univ, Dept Chem, Pullman, WA 99164 USA

Zheng, Chunxiang
论文数: 0 引用数: 0
h-index: 0
机构: Washington State Univ, Dept Chem, Pullman, WA 99164 USA

Bruce, James E.
论文数: 0 引用数: 0
h-index: 0
机构:
Washington State Univ, Dept Chem, Pullman, WA 99164 USA Washington State Univ, Dept Chem, Pullman, WA 99164 USA
[2]
Mass spectrometry analysisof HIVA Vif reveals an increase in ordered structure upon oligomerization in regions necessary for viral infectivity
[J].
Auclair, Jared R.
;
Green, Karin M.
;
Shandilya, Shivender
;
Evans, James E.
;
Somasundaran, Mohan
;
Schiffer, Celia A.
.
PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS,
2007, 69 (02)
:270-284

Auclair, Jared R.
论文数: 0 引用数: 0
h-index: 0
机构: Univ Massachusetts, Sch Med, Dept Mol Pharmacol & Biochem, Worcester, MA 01605 USA

Green, Karin M.
论文数: 0 引用数: 0
h-index: 0
机构: Univ Massachusetts, Sch Med, Dept Mol Pharmacol & Biochem, Worcester, MA 01605 USA

Shandilya, Shivender
论文数: 0 引用数: 0
h-index: 0
机构: Univ Massachusetts, Sch Med, Dept Mol Pharmacol & Biochem, Worcester, MA 01605 USA

Evans, James E.
论文数: 0 引用数: 0
h-index: 0
机构: Univ Massachusetts, Sch Med, Dept Mol Pharmacol & Biochem, Worcester, MA 01605 USA

Somasundaran, Mohan
论文数: 0 引用数: 0
h-index: 0
机构: Univ Massachusetts, Sch Med, Dept Mol Pharmacol & Biochem, Worcester, MA 01605 USA

Schiffer, Celia A.
论文数: 0 引用数: 0
h-index: 0
机构: Univ Massachusetts, Sch Med, Dept Mol Pharmacol & Biochem, Worcester, MA 01605 USA
[3]
Chemical cross-linking and mass spectrometry for protein structural modeling
[J].
Back, JW
;
de Jong, L
;
Muijsers, AO
;
de Koster, CG
.
JOURNAL OF MOLECULAR BIOLOGY,
2003, 331 (02)
:303-313

Back, JW
论文数: 0 引用数: 0
h-index: 0
机构:
Univ Amsterdam, Mass Spectrometry Grp, SILS, NL-1018 WV Amsterdam, Netherlands Univ Amsterdam, Mass Spectrometry Grp, SILS, NL-1018 WV Amsterdam, Netherlands

论文数: 引用数:
h-index:
机构:

Muijsers, AO
论文数: 0 引用数: 0
h-index: 0
机构:
Univ Amsterdam, Mass Spectrometry Grp, SILS, NL-1018 WV Amsterdam, Netherlands Univ Amsterdam, Mass Spectrometry Grp, SILS, NL-1018 WV Amsterdam, Netherlands

de Koster, CG
论文数: 0 引用数: 0
h-index: 0
机构:
Univ Amsterdam, Mass Spectrometry Grp, SILS, NL-1018 WV Amsterdam, Netherlands Univ Amsterdam, Mass Spectrometry Grp, SILS, NL-1018 WV Amsterdam, Netherlands
[4]
Identification of cross-linked peptides for protein interaction studies using mass spectrometry and 18O labeling
[J].
Back, JW
;
Notenboom, V
;
de Koning, LJ
;
Muijsers, AO
;
Sixma, TK
;
de Koster, CG
;
de Jong, LZ
.
ANALYTICAL CHEMISTRY,
2002, 74 (17)
:4417-4422

Back, JW
论文数: 0 引用数: 0
h-index: 0
机构: Univ Amsterdam, Mass Spectrometry Grp, SILS, Amsterdam, Netherlands

Notenboom, V
论文数: 0 引用数: 0
h-index: 0
机构: Univ Amsterdam, Mass Spectrometry Grp, SILS, Amsterdam, Netherlands

de Koning, LJ
论文数: 0 引用数: 0
h-index: 0
机构: Univ Amsterdam, Mass Spectrometry Grp, SILS, Amsterdam, Netherlands

Muijsers, AO
论文数: 0 引用数: 0
h-index: 0
机构: Univ Amsterdam, Mass Spectrometry Grp, SILS, Amsterdam, Netherlands

Sixma, TK
论文数: 0 引用数: 0
h-index: 0
机构: Univ Amsterdam, Mass Spectrometry Grp, SILS, Amsterdam, Netherlands

de Koster, CG
论文数: 0 引用数: 0
h-index: 0
机构: Univ Amsterdam, Mass Spectrometry Grp, SILS, Amsterdam, Netherlands

de Jong, LZ
论文数: 0 引用数: 0
h-index: 0
机构: Univ Amsterdam, Mass Spectrometry Grp, SILS, Amsterdam, Netherlands
[5]
Protein complexes in the gas phase: Technology for structural genomics and proteomics
[J].
Benesch, Justin L. P.
;
Ruotolo, Brandon T.
;
Simmons, Douglas A.
;
Robinson, Carol V.
.
CHEMICAL REVIEWS,
2007, 107 (08)
:3544-3567

Benesch, Justin L. P.
论文数: 0 引用数: 0
h-index: 0
机构:
Univ Cambridge, Dept Chem, Cambridge CB2 1EW, England Univ Cambridge, Dept Chem, Cambridge CB2 1EW, England

Ruotolo, Brandon T.
论文数: 0 引用数: 0
h-index: 0
机构:
Univ Cambridge, Dept Chem, Cambridge CB2 1EW, England Univ Cambridge, Dept Chem, Cambridge CB2 1EW, England

Simmons, Douglas A.
论文数: 0 引用数: 0
h-index: 0
机构:
Univ Cambridge, Dept Chem, Cambridge CB2 1EW, England Univ Cambridge, Dept Chem, Cambridge CB2 1EW, England

Robinson, Carol V.
论文数: 0 引用数: 0
h-index: 0
机构:
Univ Cambridge, Dept Chem, Cambridge CB2 1EW, England Univ Cambridge, Dept Chem, Cambridge CB2 1EW, England
[6]
Chemical cross-linking with thiol-cleavable reagents combined with differential mass spectrometric peptide mapping -: A novel approach to assess intermolecular protein contacts
[J].
Bennett, KL
;
Kussmann, M
;
Björk, P
;
Godzwon, M
;
Mikkelsen, M
;
Sorensen, P
;
Roepstorff, P
.
PROTEIN SCIENCE,
2000, 9 (08)
:1503-1518

Bennett, KL
论文数: 0 引用数: 0
h-index: 0
机构: Univ So Denmark, Dept Mol Biol, DK-5230 Odense M, Denmark

Kussmann, M
论文数: 0 引用数: 0
h-index: 0
机构: Univ So Denmark, Dept Mol Biol, DK-5230 Odense M, Denmark

Björk, P
论文数: 0 引用数: 0
h-index: 0
机构: Univ So Denmark, Dept Mol Biol, DK-5230 Odense M, Denmark

Godzwon, M
论文数: 0 引用数: 0
h-index: 0
机构: Univ So Denmark, Dept Mol Biol, DK-5230 Odense M, Denmark

Mikkelsen, M
论文数: 0 引用数: 0
h-index: 0
机构: Univ So Denmark, Dept Mol Biol, DK-5230 Odense M, Denmark

Sorensen, P
论文数: 0 引用数: 0
h-index: 0
机构: Univ So Denmark, Dept Mol Biol, DK-5230 Odense M, Denmark

Roepstorff, P
论文数: 0 引用数: 0
h-index: 0
机构: Univ So Denmark, Dept Mol Biol, DK-5230 Odense M, Denmark
[7]
Unraveling the interface of signal recognition particle and its receptor by using chemical cross-linking and tandem mass spectrometry
[J].
Chu, FX
;
Shan, SO
;
Moustakas, DT
;
Alber, F
;
Egea, PF
;
Stroud, RM
;
Walter, P
;
Burlingame, AL
.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA,
2004, 101 (47)
:16454-16459

Chu, FX
论文数: 0 引用数: 0
h-index: 0
机构: Univ Calif San Francisco, Dept Pharmaceut Chem, Mass Spectrometry Facil, San Francisco, CA 94143 USA

Shan, SO
论文数: 0 引用数: 0
h-index: 0
机构: Univ Calif San Francisco, Dept Pharmaceut Chem, Mass Spectrometry Facil, San Francisco, CA 94143 USA

Moustakas, DT
论文数: 0 引用数: 0
h-index: 0
机构: Univ Calif San Francisco, Dept Pharmaceut Chem, Mass Spectrometry Facil, San Francisco, CA 94143 USA

Alber, F
论文数: 0 引用数: 0
h-index: 0
机构: Univ Calif San Francisco, Dept Pharmaceut Chem, Mass Spectrometry Facil, San Francisco, CA 94143 USA

Egea, PF
论文数: 0 引用数: 0
h-index: 0
机构: Univ Calif San Francisco, Dept Pharmaceut Chem, Mass Spectrometry Facil, San Francisco, CA 94143 USA

Stroud, RM
论文数: 0 引用数: 0
h-index: 0
机构: Univ Calif San Francisco, Dept Pharmaceut Chem, Mass Spectrometry Facil, San Francisco, CA 94143 USA

Walter, P
论文数: 0 引用数: 0
h-index: 0
机构: Univ Calif San Francisco, Dept Pharmaceut Chem, Mass Spectrometry Facil, San Francisco, CA 94143 USA

Burlingame, AL
论文数: 0 引用数: 0
h-index: 0
机构: Univ Calif San Francisco, Dept Pharmaceut Chem, Mass Spectrometry Facil, San Francisco, CA 94143 USA
[8]
Computer-assisted mass spectrometric analysis of naturally occurring and artificially introduced cross-links in proteins and protein complexes
[J].
de Koning, LJ
;
Kasper, PT
;
Back, JW
;
Nessen, MA
;
Vanrobaeys, F
;
Van Beeumen, J
;
Gherardi, E
;
de Koster, CG
;
de Jong, L
.
FEBS JOURNAL,
2006, 273 (02)
:281-291

de Koning, LJ
论文数: 0 引用数: 0
h-index: 0
机构: Univ Amsterdam, Swammerdam Inst Life Sci, Biomol Mass Spectrometry Grp, NL-1018 WV Amsterdam, Netherlands

Kasper, PT
论文数: 0 引用数: 0
h-index: 0
机构: Univ Amsterdam, Swammerdam Inst Life Sci, Biomol Mass Spectrometry Grp, NL-1018 WV Amsterdam, Netherlands

Back, JW
论文数: 0 引用数: 0
h-index: 0
机构: Univ Amsterdam, Swammerdam Inst Life Sci, Biomol Mass Spectrometry Grp, NL-1018 WV Amsterdam, Netherlands

Nessen, MA
论文数: 0 引用数: 0
h-index: 0
机构: Univ Amsterdam, Swammerdam Inst Life Sci, Biomol Mass Spectrometry Grp, NL-1018 WV Amsterdam, Netherlands

Vanrobaeys, F
论文数: 0 引用数: 0
h-index: 0
机构: Univ Amsterdam, Swammerdam Inst Life Sci, Biomol Mass Spectrometry Grp, NL-1018 WV Amsterdam, Netherlands

Van Beeumen, J
论文数: 0 引用数: 0
h-index: 0
机构: Univ Amsterdam, Swammerdam Inst Life Sci, Biomol Mass Spectrometry Grp, NL-1018 WV Amsterdam, Netherlands

Gherardi, E
论文数: 0 引用数: 0
h-index: 0
机构: Univ Amsterdam, Swammerdam Inst Life Sci, Biomol Mass Spectrometry Grp, NL-1018 WV Amsterdam, Netherlands

de Koster, CG
论文数: 0 引用数: 0
h-index: 0
机构: Univ Amsterdam, Swammerdam Inst Life Sci, Biomol Mass Spectrometry Grp, NL-1018 WV Amsterdam, Netherlands

de Jong, L
论文数: 0 引用数: 0
h-index: 0
机构: Univ Amsterdam, Swammerdam Inst Life Sci, Biomol Mass Spectrometry Grp, NL-1018 WV Amsterdam, Netherlands
[9]
Mapping low-resolution three-dimensional protein structures using chemical cross-linking and Fourier transform ion-cyclotron resonance mass spectrometry
[J].
Dihazi, GH
;
Sinz, A
.
RAPID COMMUNICATIONS IN MASS SPECTROMETRY,
2003, 17 (17)
:2005-2014

Dihazi, GH
论文数: 0 引用数: 0
h-index: 0
机构:
Univ Leipzig, Fac Chem & Mineral, Biotechnol Biomed Ctr, D-04103 Leipzig, Germany Univ Leipzig, Fac Chem & Mineral, Biotechnol Biomed Ctr, D-04103 Leipzig, Germany

Sinz, A
论文数: 0 引用数: 0
h-index: 0
机构:
Univ Leipzig, Fac Chem & Mineral, Biotechnol Biomed Ctr, D-04103 Leipzig, Germany Univ Leipzig, Fac Chem & Mineral, Biotechnol Biomed Ctr, D-04103 Leipzig, Germany
[10]
AN APPROACH TO CORRELATE TANDEM MASS-SPECTRAL DATA OF PEPTIDES WITH AMINO-ACID-SEQUENCES IN A PROTEIN DATABASE
[J].
ENG, JK
;
MCCORMACK, AL
;
YATES, JR
.
JOURNAL OF THE AMERICAN SOCIETY FOR MASS SPECTROMETRY,
1994, 5 (11)
:976-989

ENG, JK
论文数: 0 引用数: 0
h-index: 0
机构:
UNIV WASHINGTON, DEPT MOLEC BIOTECHNOL, SEATTLE, WA 98185 USA UNIV WASHINGTON, DEPT MOLEC BIOTECHNOL, SEATTLE, WA 98185 USA

MCCORMACK, AL
论文数: 0 引用数: 0
h-index: 0
机构:
UNIV WASHINGTON, DEPT MOLEC BIOTECHNOL, SEATTLE, WA 98185 USA UNIV WASHINGTON, DEPT MOLEC BIOTECHNOL, SEATTLE, WA 98185 USA

YATES, JR
论文数: 0 引用数: 0
h-index: 0
机构:
UNIV WASHINGTON, DEPT MOLEC BIOTECHNOL, SEATTLE, WA 98185 USA UNIV WASHINGTON, DEPT MOLEC BIOTECHNOL, SEATTLE, WA 98185 USA