Hydrated myoglobin's anharmonic fluctuations are not primarily due to dihedral transitions

被引:46
作者
Steinbach, PJ
Brooks, BR
机构
[1] Laboratory of Structural Biology, Div. of Comp. Res. and Technology, National Institutes of Health, Bethesda
关键词
protein dynamics; protein hydration; conformational substates; dynamical transition; molecular dynamics simulation;
D O I
10.1073/pnas.93.1.55
中图分类号
O [数理科学和化学]; P [天文学、地球科学]; Q [生物科学]; N [自然科学总论];
学科分类号
07 ; 0710 ; 09 ;
摘要
To characterize the functionally important anharmonic motions of proteins, simulations of carboxymyoglobin (MbCO) dynamics have been performed during which dihedral transitions were prohibited, Comparison of torsionally restrained and unrestrained protein dynamics simulated at three levels of hydration and at temperatures ranging from 100 to 400 K suggests that hydration ''catalyzes'' protein mobility by facilitating collective anharmonic motions that do not require dihedral transitions. When dihedral transitions were prohibited, dehydrated MbCO, to a good approximation, exhibited only harmonic fluctuations, whereas hydrated MbCO exhibited both harmonic and anharmonic motions, The fluctuation of helix centers of mass also remained highly anharmonic in the torsionally restrained hydrated system, Atomic mean-square fluctuation at 300 K was reduced upon prohibition of dihedral transitions by only 28% and 10% for MbCO hydrated by 350 and 3830 water molecules, respectively.
引用
收藏
页码:55 / 59
页数:5
相关论文
共 25 条
[11]  
FRAUENFELDER H, 1988, ANNU REV BIOPHYS BIO, V17, P451
[12]   COMPARISON OF SIMPLE POTENTIAL FUNCTIONS FOR SIMULATING LIQUID WATER [J].
JORGENSEN, WL ;
CHANDRASEKHAR, J ;
MADURA, JD ;
IMPEY, RW ;
KLEIN, ML .
JOURNAL OF CHEMICAL PHYSICS, 1983, 79 (02) :926-935
[13]  
KNEELLER GR, 1994, J MOL BIOL, V242, P181
[14]  
KRUPYANSKII YF, 1982, Z NATURFORSCH C, V37, P57
[15]   TEMPERATURE-DEPENDENCE OF DYNAMICS OF HYDRATED MYOGLOBIN - COMPARISON OF FORCE-FIELD CALCULATIONS WITH NEUTRON-SCATTERING DATA [J].
LONCHARICH, RJ ;
BROOKS, BR .
JOURNAL OF MOLECULAR BIOLOGY, 1990, 215 (03) :439-455
[16]   THE EFFECTS OF TRUNCATING LONG-RANGE FORCES ON PROTEIN DYNAMICS [J].
LONCHARICH, RJ ;
BROOKS, BR .
PROTEINS-STRUCTURE FUNCTION AND GENETICS, 1989, 6 (01) :32-45
[17]   ANGULAR DEPENDENT RAYLEIGH-SCATTERING OF MOSSBAUER RADIATION ON PROTEINS [J].
NIENHAUS, GU ;
HARTMANN, H ;
PARAK, F ;
HEINZL, J ;
HUENGES, E .
HYPERFINE INTERACTIONS, 1989, 47-8 (1-4) :299-310
[18]   CRYSTALLINE RIBONUCLEASE-A LOSES FUNCTION BELOW THE DYNAMIC TRANSITION AT 220-K [J].
RASMUSSEN, BF ;
STOCK, AM ;
RINGE, D ;
PETSKO, GA .
NATURE, 1992, 357 (6377) :423-424
[19]   PROTEIN SIMULATION BELOW THE GLASS-TRANSITION TEMPERATURE - DEPENDENCE ON COOLING PROTOCOL [J].
STEINBACH, PJ ;
BROOKS, BR .
CHEMICAL PHYSICS LETTERS, 1994, 226 (5-6) :447-452
[20]   THE EFFECTS OF ENVIRONMENT AND HYDRATION ON PROTEIN DYNAMICS - A SIMULATION STUDY OF MYOGLOBIN [J].
STEINBACH, PJ ;
LONCHARICH, RJ ;
BROOKS, BR .
CHEMICAL PHYSICS, 1991, 158 (2-3) :383-394