Dualism of gene GC content and CpG pattern in regard to expression in the human genome: magnitude versus breadth

被引:47
作者
Vinogradov, AE [1 ]
机构
[1] Russian Acad Sci, Inst Cytol, St Petersburg 194064, Russia
关键词
D O I
10.1016/j.tig.2005.09.002
中图分类号
Q3 [遗传学];
学科分类号
071007 ; 090102 ;
摘要
In this article, I show that, in the human genome, the GC content in genes (but not the CpG island in the promoter) is related to the maximum level of gene expression among tissues, whereas the promoter CpG island and gene CpG level are more strongly related to the breadth of expression among tissues. The relevance of gene GC content to expression cannot be a consequence (i.e. a byproduct) of transcription because it does not correlate with expression in the germline. The variation of GC content and CpG level can determine the characteristics of gene expression in a synergistic interplay with transcription-factor-binding sites (mediated by chromatin condensation).
引用
收藏
页码:639 / 643
页数:5
相关论文
共 33 条
[1]   The connection between transcription and genomic instability [J].
Aguilera, A .
EMBO JOURNAL, 2002, 21 (03) :195-201
[2]   Base composition and expression level of human genes [J].
Arhondakis, S ;
Auletta, F ;
Torelli, G ;
D'Onofrio, G .
GENE, 2004, 325 :165-169
[3]   The compositional evolution of vertebrate genomes [J].
Bernardi, G .
GENE, 2000, 259 (1-2) :31-43
[4]   Expression patterns and gene distribution in the human genome [J].
D'Onofrio, G .
GENE, 2002, 300 (1-2) :155-160
[5]   Epigenomics: Beyond CpG islands [J].
Fazzari, MJ ;
Greally, JM .
NATURE REVIEWS GENETICS, 2004, 5 (06) :446-455
[6]   Detection of functional DNA motifs via statistical over-representation [J].
Frith, MC ;
Fu, YT ;
Yu, LQ ;
Chen, JF ;
Hansen, U ;
Weng, ZP .
NUCLEIC ACIDS RESEARCH, 2004, 32 (04) :1372-1381
[7]   Chromatin architecture of the human genome: Gene-rich domains are enriched in open chromatin fibers [J].
Gilbert, N ;
Boyle, S ;
Fiegler, H ;
Woodfine, K ;
Carter, NP ;
Bickmore, WA .
CELL, 2004, 118 (05) :555-566
[8]   Nature and structure of human genes that generate retropseudogenes [J].
Gonçalves, I ;
Duret, L ;
Mouchiroud, D .
GENOME RESEARCH, 2000, 10 (05) :672-678
[9]   Left-handed Z-DNA: structure and function [J].
Herbert, A ;
Rich, A .
GENETICA, 1999, 106 (1-2) :37-47
[10]  
Herbert JM, 1996, J BIOL CHEM, V271, P25928