Effects of abiotic stress on plants: a systems biology perspective

被引：811

作者：

Cramer, Grant R. ^{[1
]}

Urano, Kaoru ^{[2
]}

Delrot, Serge ^{[3
]}

Pezzotti, Mario ^{[4
]}

Shinozaki, Kazuo ^{[2
]}

机构：

[1] Univ Nevada, Dept Biochem & Mol Biol, Reno, NV 89557 USA

[2] RIKEN Plant Sci Ctr, Gene Discovery Res Grp, Tsukuba, Ibaraki 3050074, Japan

[3] Univ Bordeaux, ISVV, UMR 1287, F-33882 Villenave Dornon, France

[4] Univ Verona, Dipartimento Biotecnol, I-37134 Verona, Italy

来源：

BMC PLANT BIOLOGY | 2011年 / 11卷

基金：

美国国家科学基金会;

关键词：

MODEL DATA-ANALYSIS; ABSCISIC-ACID; TRANSCRIPTION FACTOR; WATER-DEFICIT; PROTEIN-SYNTHESIS; GENE-EXPRESSION; DROUGHT STRESS; POLY(ADP-RIBOSE) POLYMERASE; SNF1-RELATED KINASE; FUNCTIONAL-ANALYSIS;

D O I：

10.1186/1471-2229-11-163

中图分类号：

Q94 [植物学];

学科分类号：

071001 ;

摘要：

The natural environment for plants is composed of a complex set of abiotic stresses and biotic stresses. Plant responses to these stresses are equally complex. Systems biology approaches facilitate a multi-targeted approach by allowing one to identify regulatory hubs in complex networks. Systems biology takes the molecular parts (transcripts, proteins and metabolites) of an organism and attempts to fit them into functional networks or models designed to describe and predict the dynamic activities of that organism in different environments. In this review, research progress in plant responses to abiotic stresses is summarized from the physiological level to the molecular level. New insights obtained from the integration of omics datasets are highlighted. Gaps in our knowledge are identified, providing additional focus areas for crop improvement research in the future.

引用

页数：14

共 135 条

[21] Poly(ADP-ribose) polymerase in plants affects energy homeostasis, cell death and stress tolerance [J].

De Block, M ;

Verduyn, C ;

De Brouwer, D ;

Cornelissen, M .

PLANT JOURNAL, 2005, 41 (01) :95-106

[22] Phosphoproteomics reveals extensive in vivo phosphorylation of Arabidopsis proteins involved in RNA metabolism [J].

de la Fuente van Bentem, Sergio ;

Anrather, Dorothea ;

Roitinger, Elisabeth ;

Djamei, Armin ;

Hufnagl, Thomas ;

Barta, Andrea ;

Csaszar, Edina ;

Dohnal, Ilse ;

Lecourieux, David ;

Hirt, Heribert .

NUCLEIC ACIDS RESEARCH, 2006, 34 (11) :3267-3278

[23] Water Deficit Increases Stilbene Metabolism in Cabernet Sauvignon Berries [J].

Deluc, Laurent G. ;

Decendit, Alain ;

Papastamoulis, Yorgos ;

Merillon, Jean-Michel ;

Cushman, John C. ;

Cramer, Grant R. .

JOURNAL OF AGRICULTURAL AND FOOD CHEMISTRY, 2011, 59 (01) :289-297

[24] Water deficit alters differentially metabolic pathways affecting important flavor and quality traits in grape berries of Cabernet Sauvignon and Chardonnay [J].

Deluc, Laurent G. ;

Quilici, David R. ;

Decendit, Alain ;

Grimplet, Jerome ;

Wheatley, Matthew D. ;

Schlauch, Karen A. ;

Merillon, Jean-Michel ;

Cushman, John C. ;

Cramer, Grant R. .

BMC GENOMICS, 2009, 10

[25] The Arabidopsis TOR kinase links plant growth, yield, stress resistance and mRNA translation [J].

Deprost, Dorothee ;

Yao, Lei ;

Sormani, Rodnay ;

Moreau, Manon ;

Leterreux, Guillaume ;

Nicolaie, Maryse ;

Bedu, Magali ;

Robaglia, Christophe ;

Meyer, Christian .

EMBO REPORTS, 2007, 8 (09) :864-870

[26] WATER STRESS AND PROTEIN-SYNTHESIS .1. DIFFERENTIAL INHIBITION OF PROTEIN-SYNTHESIS [J].

DHINDSA, RS ;

CLELAND, RE .

PLANT PHYSIOLOGY, 1975, 55 (04) :778-781

[27] Cell identity mediates the response of Arabidopsis roots to abiotic stress [J].

Dinneny, Jose R. ;

Long, Terri A. ;

Wang, Jean Y. ;

Jung, Jee W. ;

Mace, Daniel ;

Pointer, Solomon ;

Barron, Christa ;

Brady, Siobhan M. ;

Schiefelbein, John ;

Benfey, Philip N. .

SCIENCE, 2008, 320 (5878) :942-945

[28] The growing scope of applications of genome-scale metabolic reconstructions using Escherichia coli [J].

Feist, Adam M. ;

Palsson, Bernhard O. .

NATURE BIOTECHNOLOGY, 2008, 26 (06) :659-667

[29] ABA and sugar interactions regulating development: cross-talk or voices in a crowd? [J].

Finkelstein, RR ;

Gibson, SI .

CURRENT OPINION IN PLANT BIOLOGY, 2002, 5 (01) :26-32

[30] Arabidopsis transcriptome profiling indicates that multiple regulatory pathways are activated during cold acclimation in addition to the CBF cold response pathway [J].

Fowler, S ;

Thomashow, MF .

PLANT CELL, 2002, 14 (08) :1675-1690

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