FeII/α-ketoglutarate hydroxylases involved in nucleobase, nucleoside, nucleotide, and chromatin metabolism

被引:48
作者
Simmons, Jana M. [1 ]
Mueller, Tina A. [2 ]
Hausinger, Robert P. [1 ,2 ,3 ]
机构
[1] Michigan State Univ, Dept Biochem & Mol Biol, E Lansing, MI 48824 USA
[2] Michigan State Univ, Dept Microbiol & Mol Genet, E Lansing, MI 48824 USA
[3] Michigan State Univ, Quantitat Biol Program, E Lansing, MI 48824 USA
关键词
D O I
10.1039/b803512a
中图分类号
O61 [无机化学];
学科分类号
070301 ; 081704 ;
摘要
Fe-II/alpha-ketoglutarate-dependent hydroxylases uniformly possess a double-stranded beta-helix fold with two conserved histidines and one carboxylate coordinating their mononuclear ferrous ions. Oxidative decomposition of the alpha-keto acid is proposed to generate a ferryl-oxo intermediate capable of hydroxylating unactivated carbon atoms in a myriad of substrates. This Perspective focuses on a subgroup of these enzymes that are involved in pyrimidine salvage, purine decomposition, nucleoside and nucleotide hydroxylation, DNA/RNA repair, and chromatin modification. The varied reaction schemes are presented, and selected structural and kinetic information is summarized.
引用
收藏
页码:5132 / 5142
页数:11
相关论文
共 101 条
[1]   Human and bacterial oxidative demethylases repair alkylation damage in both RNA and DNA [J].
Aas, PA ;
Otterlei, M ;
Falnes, PO ;
Vågbo, CB ;
Skorpen, F ;
Akbari, M ;
Sundheim, O ;
Bjorås, M ;
Slupphaug, G ;
Seeberg, E ;
Krokan, HE .
NATURE, 2003, 421 (6925) :859-863
[2]   COFACTOR REQUIREMENTS OF THYMINE 7-HYDROXYLASE [J].
ABBOTT, MT ;
SCHANDL, EK ;
LEE, RF ;
PARKER, TS ;
MIDGETT, RJ .
BIOCHIMICA ET BIOPHYSICA ACTA, 1967, 132 (02) :525-&
[3]   THYMINE 7-HYDROXYLASE FROM NEUROSPORA-CRASSA SUBSTRATE-SPECIFICITY STUDIES [J].
BANKEL, L ;
LINDSTEDT, G ;
LINDSTEDT, S .
BIOCHIMICA ET BIOPHYSICA ACTA, 1977, 481 (02) :431-437
[4]   OXYGENASES INVOLVED IN THYMINE AND THYMIDINE METABOLISM IN NEUROSPORA-CRASSA [J].
BANKEL, L ;
LINDSTEDT, G ;
LINDSTEDT, S ;
HOLME, E .
FEBS LETTERS, 1972, 21 (02) :135-+
[5]   JMJD6 is a histone arginine demethylase [J].
Chang, Bingsheng ;
Chen, Yue ;
Zhao, Yingming ;
Bruick, Richard K. .
SCIENCE, 2007, 318 (5849) :444-447
[6]   Structural insights into histone demethylation by JMJD2 family members [J].
Chen, Zhongzhou ;
Zang, Jianye ;
Whetstine, Johnathan ;
Hong, Xia ;
Davrazou, Foteini ;
Kutateladze, Tatiana G. ;
Simpson, Michael ;
Mao, Qilong ;
Pan, Cheol-Ho ;
Dai, Shaodong ;
Hagman, James ;
Hansen, Kirk ;
Shi, Yang ;
Zhang, Gongyi .
CELL, 2006, 125 (04) :691-702
[7]   Structural basis of the recognition of a methylated histone tail by JMJD2A [J].
Chen, Zhongzhou ;
Zang, Jianye ;
Kappler, John ;
Hong, Xia ;
Crawford, Frances ;
Wang, Qin ;
Lan, Fei ;
Jiang, Chengyu ;
Whetstine, Johnathan ;
Dai, Shaodong ;
Hansen, Kirk ;
Shi, Yang ;
Zhang, Gongyi .
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 2007, 104 (26) :10818-10823
[8]   Structural studies on 2-oxoglutarate oxygenases and related double-stranded β-helix fold proteins [J].
Clifton, Ian J. ;
McDonough, Michael A. ;
Ehrismann, Dominic ;
Kershaw, Nadia J. ;
Granatino, Nicolas ;
Schofield, Christopher J. .
JOURNAL OF INORGANIC BIOCHEMISTRY, 2006, 100 (04) :644-669
[9]   Specificity and mechanism of JMJD2A, a trimethyllysine-specific histone demethylase [J].
Couture, Jean-Francois ;
Collazo, Evys ;
Ortiz-Tello, Patricia A. ;
Brunzelle, Joseph S. ;
Trievel, Raymond C. .
NATURE STRUCTURAL & MOLECULAR BIOLOGY, 2007, 14 (08) :689-695
[10]   The modified base J is the target for a novel DNA-binding protein in kinetoplastid protozoans [J].
Cross, M ;
Kieft, R ;
Sabatini, R ;
Wilm, M ;
de Kort, M ;
van der Marel, GA ;
van Boom, JH ;
van Leeuwen, F ;
Borst, P .
EMBO JOURNAL, 1999, 18 (22) :6573-6581