Synthesis of a high resolution social contact network for Delhi with application to pandemic planning

被引:16
作者
Xia, Huadong [1 ]
Nagaraj, Kalyani [1 ]
Chen, Jiangzhuo [1 ]
Marathe, Madhav V. [1 ]
机构
[1] Virginia Tech, Virginia Bioinformat Inst, Network Dynam & Simulat Sci Lab, Blacksburg, VA 24060 USA
基金
美国国家科学基金会;
关键词
Networked-epidemiology; Synthetic population; Imputation techniques; Iterative proportional fitting; Labeled graphlets; Pandemic response; Targeted-layered containment; INFLUENZA-A H1N1; HUMAN MOBILITY; CONTAINMENT; SPREAD;
D O I
10.1016/j.artmed.2015.06.003
中图分类号
TP18 [人工智能理论];
学科分类号
081104 ; 0812 ; 0835 ; 1405 ;
摘要
Objective: We aim to understand quantitatively how targeted-layered containment (TLC) strategies contain an influenza pandemic in a populous urban area such as Delhi, India using networked epidemiology. Methods: A key contribution of our work is a methodology for the synthesis of a realistic individual-based social contact network for Delhi using a wide variety of open source and commercial data. New techniques were developed to infer daily activities for individuals using aggregate data published in transportation science literature in combination with human development surveys and targeted local surveys. The resulting social contact network is the first such network constructed for any urban region of India. This time varying, spatially explicit network has over 13 million people and more than 200 million people-people contacts. The network has several interesting similarities and differences when compared with similar networks of US cities. Additionally, we use a high performance agent-based modeling environment to study how an influenza-like illness would spread over Delhi. We also analyze well understood pharmaceutical and non-pharmaceutical containment strategies, or a combination thereof (also known as TLCs), to control a pandemic outbreak. Results: (i) TLC strategies produce the mildest and most delayed epidemic out-break than any of the individual interventions; (ii) the epidemic dynamics of Delhi appear to be strongly influenced by the activity patterns and the demographic structure of its local residents; and (iii) a high resolution social contact network helps in analyzing effective public health policies. Conclusion: A high resolution synthetic network is constructed based on surveyed data. It captures the underlying contact structure of a certain population and can be used to quantitatively analyze public health policy effectiveness. To the best of our knowledge, this study is the first of its kind in the Indian sub-continent. (C) 2015 Elsevier B.V. All rights reserved.
引用
收藏
页码:113 / 130
页数:18
相关论文
共 66 条
[51]   Did Modeling Overestimate the Transmission Potential of Pandemic (H1N1-2009)? Sample Size Estimation for Post-Epidemic Seroepidemiological Studies [J].
Nishiura, Hiroshi ;
Chowell, Gerardo ;
Castillo-Chavez, Carlos .
PLOS ONE, 2011, 6 (03)
[52]   Sensitivity Analysis of an Individual-Based Model for Simulation of Influenza Epidemics [J].
Nsoesie, Elaine O. ;
Beckman, Richard J. ;
Marathe, Madhav V. .
PLOS ONE, 2012, 7 (10)
[53]  
Oak Ridge National Laboratory, LANDSCAN DAT GLOB PO
[54]   A Distributed Platform for Global-Scale Agent-Based Models of Disease Transmission [J].
Parker, Jon ;
Epstein, Joshua M. .
ACM TRANSACTIONS ON MODELING AND COMPUTER SIMULATION, 2011, 22 (01)
[55]  
Pendyala RM., 2003, TRANSPORTATION SYSTE
[56]   Unravelling daily human mobility motifs [J].
Schneider, Christian M. ;
Belik, Vitaly ;
Couronne, Thomas ;
Smoreda, Zbigniew ;
Gonzalez, Marta C. .
JOURNAL OF THE ROYAL SOCIETY INTERFACE, 2013, 10 (84)
[57]   A universal model for mobility and migration patterns [J].
Simini, Filippo ;
Gonzalez, Marta C. ;
Maritan, Amos ;
Barabasi, Albert-Laszlo .
NATURE, 2012, 484 (7392) :96-100
[58]   Estimated epidemiologic parameters and morbidity associated with pandemic H1N1 influenza [J].
Tuite, Ashleigh R. ;
Greer, Amy L. ;
Whelan, Michael ;
Winter, Anne-Luise ;
Lee, Brenda ;
Yan, Ping ;
Wu, Jianhong ;
Moghadas, Seyed ;
Buckeridge, David ;
Pourbohloul, Babak ;
Fisman, David N. .
CANADIAN MEDICAL ASSOCIATION JOURNAL, 2010, 182 (02) :128-133
[59]  
Unicef Media, UN STAT WORLDS CHILD
[60]  
University Grants Commission, IND SCH COLL STAT