ProteomeXchange provides globally coordinated proteomics data submission and dissemination

被引:2221
作者
Vizcaino, Juan A. [1 ]
Deutsch, Eric W. [2 ]
Wang, Rui [1 ]
Csordas, Attila [1 ]
Reisinger, Florian [1 ]
Rios, Daniel [1 ]
Dianes, Jose A. [1 ]
Sun, Zhi [2 ]
Farrah, Terry [2 ]
Bandeira, Nuno [3 ]
Binz, Pierre-Alain [4 ]
Xenarios, Ioannis [4 ,5 ,6 ,7 ]
Eisenacher, Martin [8 ]
Mayer, Gerhard [8 ]
Gatto, Laurent [9 ,10 ]
Campos, Alex [11 ]
Chalkley, Robert J. [12 ]
Kraus, Hans-Joachim [13 ]
Pablo Albar, Juan [14 ]
Martinez-Bartolome, Salvador [14 ]
Apweiler, Rolf [1 ]
Omenn, Gilbert S. [2 ,15 ]
Martens, Lennart [16 ,17 ]
Jones, Andrew R. [18 ]
Hermjakob, Henning [1 ]
机构
[1] EBI, EMBL, Cambridge, England
[2] Inst Syst Biol, Seattle, WA USA
[3] Univ Calif San Diego, Ctr Computat Mass Spectrometry, La Jolla, CA 92093 USA
[4] SIB Swiss Inst Bioinformat, Swiss Prot Grp, Geneva, Switzerland
[5] Univ Lausanne, Lausanne, Switzerland
[6] Univ Lausanne, Ctr Integrat Genom, Lausanne, Switzerland
[7] SIB Swiss Inst Bioinformat, Vital IT Grp, Lausanne, Switzerland
[8] Ruhr Univ Bochum, Med Proteom Ctr, Bochum, Germany
[9] Univ Cambridge, Dept Biochem, Computat Prote Unit, Cambridge CB2 1QW, England
[10] Univ Cambridge, Dept Biochem, Cambridge Ctr Prote, Cambridge CB2 1QW, England
[11] Integromics SL, Madrid, Spain
[12] Univ Calif San Francisco, Dept Pharmaceut Chem, San Francisco, CA USA
[13] Wiley VCH Verlag, Weinheim, Germany
[14] CSIC, Natl Biotechnol Ctr, ProteoRed ISCIII, Madrid, Spain
[15] Univ Michigan, Ctr Computat Med & Bioinformat, Ann Arbor, MI 48109 USA
[16] Univ Ghent VIB, Dept Med Prot Res, Ghent, Belgium
[17] Univ Ghent, Dept Biochem, B-9000 Ghent, Belgium
[18] Univ Liverpool, Inst Integrat Biol, Liverpool L69 3BX, Merseyside, England
基金
英国生物技术与生命科学研究理事会; 英国惠康基金;
关键词
IDENTIFICATIONS DATABASE; PHOSPHOPROTEOMICS DATA; PEPTIDEATLAS; PRIDE;
D O I
10.1038/nbt.2839
中图分类号
Q81 [生物工程学(生物技术)]; Q93 [微生物学];
学科分类号
071005 ; 0836 ; 090102 ; 100705 ;
摘要
引用
收藏
页码:223 / 226
页数:4
相关论文
共 12 条
[1]  
[Anonymous], 2012, NAT METHODS, V9, P419
[2]   Reorganizing the protein space at the Universal Protein Resource (UniProt) [J].
Apweiler, Rolf ;
Martin, Maria Jesus ;
O'Donovan, Claire ;
Magrane, Michele ;
Alam-Faruque, Yasmin ;
Antunes, Ricardo ;
Casanova, Elisabet Barrera ;
Bely, Benoit ;
Bingley, Mark ;
Bower, Lawrence ;
Bursteinas, Borisas ;
Chan, Wei Mun ;
Chavali, Gayatri ;
Da Silva, Alan ;
Dimmer, Emily ;
Eberhardt, Ruth ;
Fazzini, Francesco ;
Fedotov, Alexander ;
Garavelli, John ;
Castro, Leyla Garcia ;
Gardner, Michael ;
Hieta, Reija ;
Huntley, Rachael ;
Jacobsen, Julius ;
Legge, Duncan ;
Liu, Wudong ;
Luo, Jie ;
Orchard, Sandra ;
Patient, Samuel ;
Pichler, Klemens ;
Poggioli, Diego ;
Pontikos, Nikolas ;
Pundir, Sangya ;
Rosanoff, Steven ;
Sawford, Tony ;
Sehra, Harminder ;
Turner, Edward ;
Wardell, Tony ;
Watkins, Xavier ;
Corbett, Matt ;
Donnelly, Mike ;
van Rensburg, Pieter ;
Goujon, Mickael ;
McWilliam, Hamish ;
Lopez, Rodrigo ;
Xenarios, Ioannis ;
Bougueleret, Lydie ;
Bridge, Alan ;
Poux, Sylvain ;
Redaschi, Nicole .
NUCLEIC ACIDS RESEARCH, 2012, 40 (D1) :D71-D75
[3]   Open source system for analyzing, validating, and storing protein identification data [J].
Craig, R ;
Cortens, JP ;
Beavis, RC .
JOURNAL OF PROTEOME RESEARCH, 2004, 3 (06) :1234-1242
[4]   Human plasma PeptideAtlas [J].
Deutsch, EW ;
Eng, JK ;
Zhang, H ;
King, NL ;
Nesvizhskii, AI ;
Lin, BY ;
Lee, HK ;
Yi, EC ;
Ossola, R ;
Aebersold, R .
PROTEOMICS, 2005, 5 (13) :3497-3500
[5]   PASSEL: The PeptideAtlas SRM experiment library [J].
Farrah, Terry ;
Deutsch, Eric W. ;
Kreisberg, Richard ;
Sun, Zhi ;
Campbell, David S. ;
Mendoza, Luis ;
Kusebauch, Ulrike ;
Brusniak, Mi-Youn ;
Huettenhain, Ruth ;
Schiess, Ralph ;
Selevsek, Nathalie ;
Aebersold, Ruedi ;
Moritz, Robert L. .
PROTEOMICS, 2012, 12 (08) :1170-1175
[6]   Discovery of O-GlcNAc-6-phosphate Modified Proteins in Large-scale Phosphoproteomics Data [J].
Hahne, Hannes ;
Kuster, Bernhard .
MOLECULAR & CELLULAR PROTEOMICS, 2012, 11 (10) :1063-1069
[7]   The Proteomics Identifications Database (PRIDE) and the ProteomExchange Consortium: making proteomics data accessible [J].
Hermjakob, Henning ;
Apweiler, Rolf .
EXPERT REVIEW OF PROTEOMICS, 2006, 3 (01) :1-3
[8]   PRIDE: The proteomics identifications database [J].
Martens, L ;
Hermjakob, H ;
Jones, P ;
Adamski, M ;
Taylor, C ;
States, D ;
Gevaert, K ;
Vandekerckhove, J ;
Apweiler, R .
PROTEOMICS, 2005, 5 (13) :3537-3545
[9]   Reanalysis of phosphoproteomics data uncovers ADP-ribosylation sites [J].
Matic, Ivan ;
Ahel, Ivan ;
Hay, Ronald T. .
NATURE METHODS, 2012, 9 (08) :771-772
[10]   Effective Representation and Storage of Mass Spectrometry-Based Proteomic Data Sets for the Scientific Community [J].
Olsen, Jesper V. ;
Mann, Matthias .
SCIENCE SIGNALING, 2011, 4 (160)