INTERFEROME: the database of interferon regulated genes

被引:195
作者
Samarajiwa, Shamith A. [1 ,2 ]
Forster, Sam [1 ]
Auchettl, Katie [1 ]
Hertzog, Paul J. [1 ,2 ]
机构
[1] Monash Univ, Monash Inst Med Res, Ctr Innate Immun & Infect Dis, Clayton, Vic, Australia
[2] CRC Chron Inflammatory Dis, Melbourne, Vic, Australia
基金
英国医学研究理事会;
关键词
MICROARRAY ANALYSIS; STIMULATED GENES; IFN-ALPHA; FUNCTIONAL ANNOTATION; EXPRESSION; CELLS; BETA; IDENTIFICATION; TRANSCRIPTION; RESPONSES;
D O I
10.1093/nar/gkn732
中图分类号
Q5 [生物化学]; Q7 [分子生物学];
学科分类号
071010 ; 081704 ;
摘要
INTERFEROME is an open access database of types I, II and III Interferon regulated genes (http://www.interferome.org) collected from analysing expression data sets of cells treated with IFNs. This database of interferon regulated genes integrates information from high-throughput experiments with annotation, ontology, orthologue sequences from 37 species, tissue expression patterns and gene regulatory information to enable a detailed investigation of the molecular mechanisms underlying IFN biology. INTERFEROME fulfils a need in infection, immunity, development and cancer research by providing computational tools to assist in identifying interferon signatures in gene lists generated by high-throughput expression technologies, and their potential molecular and biological consequences.
引用
收藏
页码:D852 / D857
页数:6
相关论文
共 56 条
[1]   IDconverter and IDClight:: Conversion and annotation of gene and protein IDs [J].
Alibes, Andreu ;
Yankilevich, Patricio ;
Canada, Andres ;
Diaz-Uriarte, Ramon .
BMC BIOINFORMATICS, 2007, 8
[2]   Gene Ontology: tool for the unification of biology [J].
Ashburner, M ;
Ball, CA ;
Blake, JA ;
Botstein, D ;
Butler, H ;
Cherry, JM ;
Davis, AP ;
Dolinski, K ;
Dwight, SS ;
Eppig, JT ;
Harris, MA ;
Hill, DP ;
Issel-Tarver, L ;
Kasarskis, A ;
Lewis, S ;
Matese, JC ;
Richardson, JE ;
Ringwald, M ;
Rubin, GM ;
Sherlock, G .
NATURE GENETICS, 2000, 25 (01) :25-29
[3]   The Universal Protein Resource (UniProt) [J].
Bairoch, Amos ;
Bougueleret, Lydie ;
Altairac, Severine ;
Amendolia, Valeria ;
Auchincloss, Andrea ;
Puy, Ghislaine Argoud ;
Axelsen, Kristian ;
Baratin, Delphine ;
Blatter, Marie-Claude ;
Boeckmann, Brigitte ;
Bollondi, Laurent ;
Boutet, Emmanuel ;
Quintaje, Silvia Braconi ;
Breuza, Lionel ;
Bridge, Alan ;
Saux, Virginie Bulliard-Le ;
decastro, Edouard ;
Ciampina, Luciane ;
Coral, Danielle ;
Coudert, Elisabeth ;
Cusin, Isabelle ;
David, Fabrice ;
Delbard, Gwennaelle ;
Dornevil, Dolnide ;
Duek-Roggli, Paula ;
Duvaud, Severine ;
Estreicher, Anne ;
Famiglietti, Livia ;
Farriol-Mathis, Nathalie ;
Ferro, Serenella ;
Feuermann, Marc ;
Gasteiger, Elisabeth ;
Gateau, Alain ;
Gehant, Sebastian ;
Gerritsen, Vivienne ;
Gos, Arnaud ;
Gruaz-Gumowski, Nadine ;
Hinz, Ursula ;
Hulo, Chantal ;
Hulo, Nicolas ;
Innocenti, Alessandro ;
James, Janet ;
Jain, Eric ;
Jimenez, Silvia ;
Jungo, Florence ;
Junker, Vivien ;
Keller, Guillaume ;
Lachaize, Corinne ;
Lane-Guermonprez, Lydie ;
Langendijk-Genevaux, Petra .
NUCLEIC ACIDS RESEARCH, 2008, 36 :D190-D195
[4]   IFN-α/β receptor interactions to biologic outcomes:: Understanding the circuitry [J].
Brierley, MM ;
Fish, EN .
JOURNAL OF INTERFERON AND CYTOKINE RESEARCH, 2002, 22 (08) :835-845
[5]   Identification of GAS-dependent interferon-sensitive target genes whose transcription is STAT2-dependent but ISGF3-independent [J].
Brierley, MM ;
Marchington, KL ;
Jurisica, I ;
Fish, EN .
FEBS JOURNAL, 2006, 273 (07) :1569-1581
[6]   A microarray analysis for genes regulated by interferon-τ in ovine luminal epithelial cells [J].
Chen, Yizhen ;
Antoniou, Eric ;
Liu, Zhilin ;
Hearne, Leonard B. ;
Roberts, R. Michael .
REPRODUCTION, 2007, 134 (01) :123-135
[7]   Interferon-α and -β differentially regulate osteoclastogenesis:: Role of differential induction of chemokine CXCL11 expression [J].
Coelho, LFL ;
Almeida, GMD ;
Mennechet, FJD ;
Blangy, A ;
Uzé, G .
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 2005, 102 (33) :11917-11922
[8]  
de Veer MJ, 2001, J LEUKOCYTE BIOL, V69, P912
[9]   Type I interferon receptors: Biochemistry and biological functions [J].
de Weerd, Nicole A. ;
Samarajiwa, Shamith A. ;
Hertzog, Paul J. .
JOURNAL OF BIOLOGICAL CHEMISTRY, 2007, 282 (28) :20053-20057
[10]   Identification of genes differentially regulated by interferon α, β, or γ using oligonucleotide arrays [J].
Der, SD ;
Zhou, AM ;
Williams, BRG ;
Silverman, RH .
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 1998, 95 (26) :15623-15628