Structural and functional analysis of hypothetical proteins in mouse hippocampus from two-dimensional gel electrophoresis

被引:9
作者
Afjehi-Sadat, Leila
Yang, Jae-Won
Pollak, Arnold
Kim, Dae-Won
Choi, Soo-Young
Lubec, Gert
机构
[1] Med Univ Vienna, Dept Pediat, A-1090 Vienna, Austria
[2] Hallym Univ, Dept Biomed Sci, Chunchon, South Korea
关键词
hypothetical proteins; enzyme activity; 2D gel electrophoresis; recovery of enzyme activity; mass spectrometry;
D O I
10.1021/pr060453o
中图分类号
Q5 [生物化学];
学科分类号
071010 ; 081704 ;
摘要
Protein profiling in five individual mouse strains showed strain-specific expression of three hypothetical proteins (HPs). As functional and structural assignment of HPs were based on predictions and low identity to known structures, HPs were identified by MALDI-TOF/TOF, and their proposed tentative function was determined by enzyme assays. Three identified HPs were extracted from gels and renatured, and pyridoxal phosphate phosphatase, inorganic pyrophosphate phosphatase, and antioxidant activities were revealed, findings in agreement with functional predictions.
引用
收藏
页码:711 / 723
页数:13
相关论文
共 53 条
[1]   Detection of hypothetical proteins in 10 individual human tumor cell lines [J].
Afjehi-Sadat, L ;
Shin, JH ;
Felizardo, M ;
Lee, K ;
Slavc, I ;
Lubec, G .
BIOCHIMICA ET BIOPHYSICA ACTA-PROTEINS AND PROTEOMICS, 2005, 1747 (01) :67-80
[2]   Hypothetical proteins with putative enzyme activity in human amnion, lymphocyte, bronchial epithelial and kidney cell lines [J].
Afjehi-Sadat, L ;
Krapfenbauer, K ;
Slavc, I ;
Fountoulakis, M ;
Lubec, G .
BIOCHIMICA ET BIOPHYSICA ACTA-PROTEINS AND PROTEOMICS, 2004, 1700 (01) :65-74
[3]   Mass spectrometric identification of serine hydrolase OVCA2 in the medulloblastoma cell line DAOY [J].
Azizi, Amedeo A. ;
Gelpi, Ellen ;
Yang, Jae-Won ;
Rupp, Bernhard ;
Godwin, Andrew K. ;
Slater, Carolyn ;
Slavc, Irene ;
Lubec, Gert .
CANCER LETTERS, 2006, 241 (02) :235-249
[4]   The ferric reducing ability of plasma (FRAP) as a measure of ''antioxidant power'': The FRAP assay [J].
Benzie, IFF ;
Strain, JJ .
ANALYTICAL BIOCHEMISTRY, 1996, 239 (01) :70-76
[5]  
BRADFORD MM, 1976, ANAL BIOCHEM, V72, P248, DOI 10.1016/0003-2697(76)90527-3
[6]  
CAMP VM, 1983, CLIN CHEM, V29, P642
[7]   Human brain gaba transaminase is immunologically distinct from those of other mammalian brains [J].
Choi, EY ;
Jang, SH ;
Choi, SY .
NEUROCHEMISTRY INTERNATIONAL, 1996, 28 (5-6) :597-600
[8]   Structural bioinformatics and its impact to biomedical science [J].
Chou, KC .
CURRENT MEDICINAL CHEMISTRY, 2004, 11 (16) :2105-2134
[9]   Predicting eukaryotic protein subcellular location by fusing optimized evidence-theoretic K-Nearest Neighbor classifiers [J].
Chou, Kuo-Chen ;
Shen, Hong-Bin .
JOURNAL OF PROTEOME RESEARCH, 2006, 5 (08) :1888-1897
[10]  
Eum WS, 2005, J BIOCHEM MOL BIOL, V38, P71