ZINC: A Free Tool to Discover Chemistry for Biology

被引:1932
作者
Irwin, John J. [1 ]
Sterling, Teague [1 ]
Mysinger, Michael M. [1 ]
Bolstad, Erin S. [1 ]
Coleman, Ryan G. [1 ]
机构
[1] Univ Calif San Francisco, Dept Pharmaceut Chem, San Francisco, CA 94158 USA
关键词
SCF SOLVATION; FREE-ENERGIES; DATABASE; DOCKING; MODEL; PREDICTION; DESIGN; IMPACT; ENZYME; LEADS;
D O I
10.1021/ci3001277
中图分类号
R914 [药物化学];
学科分类号
100701 ;
摘要
ZINC is a free public resource for ligand discovery. The database contains over twenty million commercially available molecules in biologically relevant representations that may be downloaded in popular ready-to-dock formats and subsets. The Web site also enables searches by structure, biological activity, physical property, vendor, catalog number, name, and CAS number. Small custom subsets may be created, edited, shared, docked, downloaded, and conveyed to a vendor for purchase. The database is maintained and curated for a high purchasing success rate and is freely available at zinc.docking.org.
引用
收藏
页码:1757 / 1768
页数:12
相关论文
共 39 条
[21]   ALARM NMR: A rapid and robust experimental method to detect reactive false positives in biochemical screens [J].
Huth, JR ;
Mendoza, R ;
Olejniczak, ET ;
Johnson, RW ;
Cothron, DA ;
Liu, YY ;
Lerner, CG ;
Chen, J ;
Hajduk, PJ .
JOURNAL OF THE AMERICAN CHEMICAL SOCIETY, 2005, 127 (01) :217-224
[22]   Virtual screening against metalloenzymes for inhibitors and substrates [J].
Irwin, JJ ;
Raushel, FM ;
Shoichet, BK .
BIOCHEMISTRY, 2005, 44 (37) :12316-12328
[23]   ZINC - A free database of commercially available compounds for virtual screening [J].
Irwin, JJ ;
Shoichet, BK .
JOURNAL OF CHEMICAL INFORMATION AND MODELING, 2005, 45 (01) :177-182
[24]   DrugBank 3.0: a comprehensive resource for 'Omics' research on drugs [J].
Knox, Craig ;
Law, Vivian ;
Jewison, Timothy ;
Liu, Philip ;
Ly, Son ;
Frolkis, Alex ;
Pon, Allison ;
Banco, Kelly ;
Mak, Christine ;
Neveu, Vanessa ;
Djoumbou, Yannick ;
Eisner, Roman ;
Guo, An Chi ;
Wishart, David S. .
NUCLEIC ACIDS RESEARCH, 2011, 39 :D1035-D1041
[25]   PubChem as a public resource for drug discovery [J].
Li, Qingliang ;
Chen, Tiejun ;
Wang, Yanli ;
Bryant, Stephen H. .
DRUG DISCOVERY TODAY, 2010, 15 (23-24) :1052-1057
[26]   BindingDB: a web-accessible database of experimentally determined protein-ligand binding affinities [J].
Liu, Tiqing ;
Lin, Yuhmei ;
Wen, Xin ;
Jorissen, Robert N. ;
Gilson, Michael K. .
NUCLEIC ACIDS RESEARCH, 2007, 35 :D198-D201
[27]   Hierarchical docking of databases of multiple ligand conformations [J].
Lorber, DM ;
Shoichet, BK .
CURRENT TOPICS IN MEDICINAL CHEMISTRY, 2005, 5 (08) :739-749
[28]  
Lorber DM, 1998, PROTEIN SCI, V7, P938
[29]   Let's not forget tautomers [J].
Martin, Yvonne Connolly .
JOURNAL OF COMPUTER-AIDED MOLECULAR DESIGN, 2009, 23 (10) :693-704
[30]   Tautomer Preference in PDB Complexes and its Impact on Structure-Based Drug Discovery [J].
Milletti, Francesca ;
Vulpetti, Anna .
JOURNAL OF CHEMICAL INFORMATION AND MODELING, 2010, 50 (06) :1062-1074