OligoArray: genome-scale oligonucleotide design for microarrays

被引:110
作者
Rouillard, JM [1 ]
Herbert, CJ
Zuker, M
机构
[1] Univ Michigan, Dept Chem Engn, Ann Arbor, MI 48109 USA
[2] CNRS, Ctr Genet Mol, F-91198 Gif Sur Yvette, France
[3] Rensselaer Polytech Inst, Dept Math Sci, Troy, NY 12180 USA
关键词
D O I
10.1093/bioinformatics/18.3.486
中图分类号
Q5 [生物化学];
学科分类号
071010 ; 081704 ;
摘要
OligoArray is a program that computes gene specific and secondary structure free oligonucleotides for genome-scale oligonucleotide microarray construction or other applications.
引用
收藏
页码:486 / 487
页数:2
相关论文
共 8 条
[1]   Gapped BLAST and PSI-BLAST: a new generation of protein database search programs [J].
Altschul, SF ;
Madden, TL ;
Schaffer, AA ;
Zhang, JH ;
Zhang, Z ;
Miller, W ;
Lipman, DJ .
NUCLEIC ACIDS RESEARCH, 1997, 25 (17) :3389-3402
[2]   A comparative study of duplications in bacteria and eukaryotes: The importance of telomeres [J].
Coissac, E ;
Maillier, E ;
Netter, P .
MOLECULAR BIOLOGY AND EVOLUTION, 1997, 14 (10) :1062-1074
[3]   Expression profiling using microarrays fabricated by an ink-jet oligonucleotide synthesizer [J].
Hughes, TR ;
Mao, M ;
Jones, AR ;
Burchard, J ;
Marton, MJ ;
Shannon, KW ;
Lefkowitz, SM ;
Ziman, M ;
Schelter, JM ;
Meyer, MR ;
Kobayashi, S ;
Davis, C ;
Dai, HY ;
He, YDD ;
Stephaniants, SB ;
Cavet, G ;
Walker, WL ;
West, A ;
Coffey, E ;
Shoemaker, DD ;
Stoughton, R ;
Blanchard, AP ;
Friend, SH ;
Linsley, PS .
NATURE BIOTECHNOLOGY, 2001, 19 (04) :342-347
[4]   Assessment of the sensitivity and specificity of oligonucleotide (50mer) microarrays [J].
Kane, MD ;
Jatkoe, TA ;
Stumpf, CR ;
Lu, J ;
Thomas, JD ;
Madore, SJ .
NUCLEIC ACIDS RESEARCH, 2000, 28 (22) :4552-4557
[5]   High density synthetic oligonucleotide arrays [J].
Lipshutz, RJ ;
Fodor, SPA ;
Gingeras, TR ;
Lockhart, DJ .
NATURE GENETICS, 1999, 21 (Suppl 1) :20-24
[7]   QUANTITATIVE MONITORING OF GENE-EXPRESSION PATTERNS WITH A COMPLEMENTARY-DNA MICROARRAY [J].
SCHENA, M ;
SHALON, D ;
DAVIS, RW ;
BROWN, PO .
SCIENCE, 1995, 270 (5235) :467-470
[8]  
Zuker M., 1999, NATO ASI Series