The UCSC Genome Browser database: extensions and updates 2013

被引：564

作者：

Meyer, Laurence R. ^{[1
]}

Zweig, Ann S. ^{[1
]}

Hinrichs, Angie S. ^{[1
]}

Karolchik, Donna ^{[1
]}

Kuhn, Robert M. ^{[1
]}

Wong, Matthew ^{[1
]}

Sloan, Cricket A. ^{[1
]}

Rosenbloom, Kate R. ^{[1
]}

Roe, Greg ^{[1
]}

Rhead, Brooke ^{[1
]}

Raney, Brian J. ^{[1
]}

Pohl, Andy ^{[1
,2
]}

Malladi, Venkat S. ^{[1
]}

Li, Chin H. ^{[1
]}

Lee, Brian T. ^{[1
]}

Learned, Katrina ^{[1
]}

Kirkup, Vanessa ^{[1
]}

Hsu, Fan ^{[1
]}

Heitner, Steve ^{[1
]}

Harte, Rachel A. ^{[1
]}

Haeussler, Maximilian ^{[1
]}

Guruvadoo, Luvina ^{[1
]}

Goldman, Mary ^{[1
]}

Giardine, Belinda M. ^{[3
]}

Fujita, Pauline A. ^{[1
]}

Dreszer, Timothy R. ^{[1
]}

Diekhans, Mark ^{[1
]}

Cline, Melissa S. ^{[1
]}

Clawson, Hiram ^{[1
]}

Barber, Galt P. ^{[1
]}

Haussler, David ^{[1
,4
]}

Kent, W. James ^{[1
]}

机构：

[1] Univ Calif Santa Cruz, Ctr Biomol Sci & Engn, Sch Engn, Santa Cruz, CA 95064 USA

[2] CRG, Barcelona 08003, Spain

[3] Penn State Univ, Ctr Comparat Genom & Bioinformat, Huck Inst Life Sci, University Pk, PA 16802 USA

[4] Univ Calif Santa Cruz, Howard Hughes Med Inst, Santa Cruz, CA 95064 USA

来源：

NUCLEIC ACIDS RESEARCH | 2013年 / 41卷 / D1期

关键词：

SEQUENCES; SITES; MAP;

D O I：

10.1093/nar/gks1048

中图分类号：

Q5 [生物化学]; Q7 [分子生物学];

学科分类号：

071010 ; 081704 ;

摘要：

The University of California Santa Cruz (UCSC) Genome Browser (http://genome.ucsc.edu) offers online public access to a growing database of genomic sequence and annotations for a wide variety of organisms. The Browser is an integrated tool set for visualizing, comparing, analysing and sharing both publicly available and user-generated genomic datasets. As of September 2012, genomic sequence and a basic set of annotation 'tracks' are provided for 63 organisms, including 26 mammals, 13 non-mammal vertebrates, 3 invertebrate deuterostomes, 13 insects, 6 worms, yeast and sea hare. In the past year 19 new genome assemblies have been added, and we anticipate releasing another 28 in early 2013. Further, a large number of annotation tracks have been either added, updated by contributors or remapped to the latest human reference genome. Among these are an updated UCSC Genes track for human and mouse assemblies. We have also introduced several features to improve usability, including new navigation menus. This article provides an update to the UCSC Genome Browser database, which has been previously featured in the Database issue of this journal.

引用

页码：D64 / D69

页数：6

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