De novo gene mutations highlight patterns of genetic and neural complexity in schizophrenia

被引:323
作者
Xu, Bin [1 ]
Ionita-Laza, Juliana [2 ]
Roos, J. Louw [3 ,4 ]
Boone, Braden [5 ]
Woodrick, Scarlet [1 ,6 ]
Sun, Yan [1 ]
Levy, Shawn [5 ]
Gogos, Joseph A. [6 ,7 ]
Karayiorgou, Maria [1 ]
机构
[1] Columbia Univ, Dept Psychiat, New York, NY 10027 USA
[2] Columbia Univ, Dept Biostat, New York, NY USA
[3] Weskoppies Hosp, Pretoria, South Africa
[4] Univ Pretoria, Dept Psychiat, ZA-0002 Pretoria, South Africa
[5] HudsonAlpha Inst Biotechnol, Huntsville, AL USA
[6] Columbia Univ, Dept Physiol & Cellular Biophys, New York, NY USA
[7] Columbia Univ, Dept Neurosci, New York, NY USA
关键词
ARCHITECTURE; PHENOTYPE; VARIANT;
D O I
10.1038/ng.2446
中图分类号
Q3 [遗传学];
学科分类号
071007 ; 090102 ;
摘要
To evaluate evidence for de novo etiologies in schizophrenia, we sequenced at high coverage the exomes of families recruited from two populations with distinct demographic structures and history. We sequenced a total of 795 exomes from 231 parent-proband trios enriched for sporadic schizophrenia cases, as well as 34 unaffected trios. We observed in cases an excess of de novo nonsynonymous single-nucleotide variants as well as a higher prevalence of gene-disruptive de novo mutations relative to controls. We found four genes (LAMA2, DPYD, TRRAP and VPS39) affected by recurrent de novo events within or across the two populations, which is unlikely to have occurred by chance. We show that de novo mutations affect genes with diverse functions and developmental profiles, but we also find a substantial contribution of mutations in genes with higher expression in early fetal life. Our results help define the genomic and neural architecture of schizophrenia.
引用
收藏
页码:1365 / 1369
页数:5
相关论文
共 31 条
[11]   The expanding phenotype of laminin α2 chain (merosin) abnormalities:: case series and review [J].
Jones, KJ ;
Morgan, G ;
Johnston, H ;
Tobias, V ;
Ouvrier, RA ;
Wilkinson, I ;
North, KN .
JOURNAL OF MEDICAL GENETICS, 2001, 38 (10) :649-657
[12]   Spatio-temporal transcriptome of the human brain [J].
Kang, Hyo Jung ;
Kawasawa, Yuka Imamura ;
Cheng, Feng ;
Zhu, Ying ;
Xu, Xuming ;
Li, Mingfeng ;
Sousa, Andre M. M. ;
Pletikos, Mihovil ;
Meyer, Kyle A. ;
Sedmak, Goran ;
Guennel, Tobias ;
Shin, Yurae ;
Johnson, Matthew B. ;
Krsnik, Zeljka ;
Mayer, Simone ;
Fertuzinhos, Sofia ;
Umlauf, Sheila ;
Lisgo, Steven N. ;
Vortmeyer, Alexander ;
Weinberger, Daniel R. ;
Mane, Shrikant ;
Hyde, Thomas M. ;
Huttner, Anita ;
Reimers, Mark ;
Kleinman, Joel E. ;
Sestan, Nenad .
NATURE, 2011, 478 (7370) :483-489
[13]   The best of times, the worst of times for psychiatric disease [J].
Karayiorgou, Maria ;
Flint, Jonathan ;
Gogos, Joseph A. ;
Malenka, Robert C. .
NATURE NEUROSCIENCE, 2012, 15 (06) :811-812
[14]   SCHIZOPHRENIA SUSCEPTIBILITY ASSOCIATED WITH INTERSTITIAL DELETIONS OF CHROMOSOME 22Q11 [J].
KARAYIORGOU, P ;
MORRIS, MA ;
MORROW, B ;
SHPRINTZEN, RJ ;
GOLDBERG, R ;
BORROW, J ;
GOS, A ;
NESTADT, G ;
WOLYNIEC, PS ;
LASSETER, VK ;
EISEN, H ;
CHILDS, B ;
KAZAZIAN, HH ;
KUCHERLAPATI, R ;
ANTONARAKIS, SE ;
PULVER, AE ;
HOUSMAN, DE .
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 1995, 92 (17) :7612-7616
[15]   De novo CNV analysis implicates specific abnormalities of postsynaptic signalling complexes in the pathogenesis of schizophrenia [J].
Kirov, G. ;
Pocklington, A. J. ;
Holmans, P. ;
Ivanov, D. ;
Ikeda, M. ;
Ruderfer, D. ;
Moran, J. ;
Chambert, K. ;
Toncheva, D. ;
Georgieva, L. ;
Grozeva, D. ;
Fjodorova, M. ;
Wollerton, R. ;
Rees, E. ;
Nikolov, I. ;
van de Lagemaat, L. N. ;
Bayes, A. ;
Fernandez, E. ;
Olason, P. I. ;
Boettcher, Y. ;
Komiyama, N. H. ;
Collins, M. O. ;
Choudhary, J. ;
Stefansson, K. ;
Stefansson, H. ;
Grant, S. G. N. ;
Purcell, S. ;
Sklar, P. ;
O'Donovan, M. C. ;
Owen, M. J. .
MOLECULAR PSYCHIATRY, 2012, 17 (02) :142-153
[16]   Most rare missense alleles are deleterious in humans: Implications for complex disease and association studies [J].
Kryukov, Gregory V. ;
Pennacchio, Len A. ;
Sunyaev, Shamil R. .
AMERICAN JOURNAL OF HUMAN GENETICS, 2007, 80 (04) :727-739
[17]   High Frequencies of De Novo CNVs in Bipolar Disorder and Schizophrenia [J].
Malhotra, Dheeraj ;
McCarthy, Shane ;
Michaelson, Jacob J. ;
Vacic, Vladimir ;
Burdick, Katherine E. ;
Yoon, Seungtai ;
Cichon, Sven ;
Corvin, Aiden ;
Gary, Sydney ;
Gershon, Elliot S. ;
Gill, Michael ;
Karayiorgou, Maria ;
Kelsoe, John R. ;
Krastoshevsky, Olga ;
Krause, Verena ;
Leibenluft, Ellen ;
Levy, Deborah L. ;
Makarov, Vladimir ;
Bhandari, Abhishek ;
Malhotra, Anil K. ;
McMahon, Francis J. ;
Noethen, Markus M. ;
Potash, James B. ;
Rietschel, Marcella ;
Schulze, Thomas G. ;
Sebat, Jonathan .
NEURON, 2011, 72 (06) :951-963
[18]   New directions in the epidemiology of schizophrenia [J].
McGrath, John J. ;
Susser, Ezra S. .
MEDICAL JOURNAL OF AUSTRALIA, 2009, 190 (04) :S7-S9
[19]   Patterns and rates of exonic de novo mutations in autism spectrum disorders [J].
Neale, Benjamin M. ;
Kou, Yan ;
Liu, Li ;
Ma'ayan, Avi ;
Samocha, Kaitlin E. ;
Sabo, Aniko ;
Lin, Chiao-Feng ;
Stevens, Christine ;
Wang, Li-San ;
Makarov, Vladimir ;
Polak, Paz ;
Yoon, Seungtai ;
Maguire, Jared ;
Crawford, Emily L. ;
Campbell, Nicholas G. ;
Geller, Evan T. ;
Valladares, Otto ;
Schafer, Chad ;
Liu, Han ;
Zhao, Tuo ;
Cai, Guiqing ;
Lihm, Jayon ;
Dannenfelser, Ruth ;
Jabado, Omar ;
Peralta, Zuleyma ;
Nagaswamy, Uma ;
Muzny, Donna ;
Reid, Jeffrey G. ;
Newsham, Irene ;
Wu, Yuanqing ;
Lewis, Lora ;
Han, Yi ;
Voight, Benjamin F. ;
Lim, Elaine ;
Rossin, Elizabeth ;
Kirby, Andrew ;
Flannick, Jason ;
Fromer, Menachem ;
Shakir, Khalid ;
Fennell, Tim ;
Garimella, Kiran ;
Banks, Eric ;
Poplin, Ryan ;
Gabriel, Stacey ;
DePristo, Mark ;
Wimbish, Jack R. ;
Boone, Braden E. ;
Levy, Shawn E. ;
Betancur, Catalina ;
Sunyaev, Shamil .
NATURE, 2012, 485 (7397) :242-U129
[20]   Sporadic autism exomes reveal a highly interconnected protein network of de novo mutations [J].
O'Roak, Brian J. ;
Vives, Laura ;
Girirajan, Santhosh ;
Karakoc, Emre ;
Krumm, Niklas ;
Coe, Bradley P. ;
Levy, Roie ;
Ko, Arthur ;
Lee, Choli ;
Smith, Joshua D. ;
Turner, Emily H. ;
Stanaway, Ian B. ;
Vernot, Benjamin ;
Malig, Maika ;
Baker, Carl ;
Reilly, Beau ;
Akey, Joshua M. ;
Borenstein, Elhanan ;
Rieder, Mark J. ;
Nickerson, Deborah A. ;
Bernier, Raphael ;
Shendure, Jay ;
Eichler, Evan E. .
NATURE, 2012, 485 (7397) :246-U136