Broad Coverage of Commercially Available Lead-like Screening Space with Fewer than 350,000 Compounds

被引:55
作者
Baell, Jonathan B. [1 ,2 ,3 ]
机构
[1] Monash Univ, Monash Inst Pharmaceut Sci, Parkville, Vic 3052, Australia
[2] Walter & Eliza Hall Inst Med Res, Parkville, Vic 3052, Australia
[3] Univ Melbourne, Dept Med Biol, Parkville, Vic 3010, Australia
基金
澳大利亚国家健康与医学研究理事会;
关键词
ORGANIC SMALL MOLECULES; HIGH-THROUGHPUT; DRUG DISCOVERY; CHEMICAL SPACE; REACTIVE COMPOUNDS; FALSE POSITIVES; VINYL SULFONES; DIVERSITY; LIBRARIES; DESIGN;
D O I
10.1021/ci300461a
中图分类号
R914 [药物化学];
学科分类号
100701 ;
摘要
In establishing what we propose is the globe's highest quality collection of available screening compounds, it is convincingly shown that the globe's pool of such compounds is extremely shallow and can be represented by fewer than 350,000 compounds. To support our argument, we discuss and fully disclose our extensive battery of functional group filters. We discuss the use of PAINS filters and also show the effect of similarity exclusion on structure-activity relationships. We show why limited analogue representation requires screening at higher concentrations to capture hit classes for difficult targets that otherwise may be prosecuted unsuccessfully. We construct our arguments in a structurally focused manner to be most useful to medicinal chemists, the key players in drug discovery.
引用
收藏
页码:39 / 55
页数:17
相关论文
共 63 条
[41]   Enhancement of chemical rules for predicting compound reactivity towards protein thiol groups [J].
Metz, James T. ;
Huth, Jeffrey R. ;
Hajduk, Philip J. .
JOURNAL OF COMPUTER-AIDED MOLECULAR DESIGN, 2007, 21 (1-3) :139-144
[42]   Lead-Oriented Synthesis: A New Opportunity for Synthetic Chemistry [J].
Nadin, Alan ;
Hattotuwagama, Channa ;
Churcher, Ian .
ANGEWANDTE CHEMIE-INTERNATIONAL EDITION, 2012, 51 (05) :1114-1122
[43]   A generally applicable method for assessing the electrophilicity and reactivity of diverse nitrile-containing compounds [J].
Oballa, Renata M. ;
Truchon, Jean-Francois ;
Bayly, Christopher I. ;
Chauret, Nathalie ;
Day, Stephen ;
Crane, Sheldon ;
Berthelette, Carl .
BIOORGANIC & MEDICINAL CHEMISTRY LETTERS, 2007, 17 (04) :998-1002
[44]   VINYL SULFONES AS MECHANISM-BASED CYSTEINE PROTEASE INHIBITORS [J].
PALMER, JT ;
RASNICK, D ;
KLAUS, JL ;
BROMME, D .
JOURNAL OF MEDICINAL CHEMISTRY, 1995, 38 (17) :3193-3196
[45]   An empirical process for the design of high-throughput screening deck filters [J].
Pearce, Bradley C. ;
Sofia, Michael J. ;
Good, Andrew C. ;
Drexler, Dieter M. ;
Stock, David A. .
JOURNAL OF CHEMICAL INFORMATION AND MODELING, 2006, 46 (03) :1060-1068
[46]   Relative rates of Michael reactions of 2′-(phenethyl)thiol with vinyl sulfones, vinyl sulfonate esters, and vinyl sulfonamides relevant to vinyl sulfonyl cysteine protease inhibitors [J].
Reddick, JJ ;
Cheng, JM ;
Roush, WR .
ORGANIC LETTERS, 2003, 5 (11) :1967-1970
[47]  
Renner S, 2011, FUTURE MED CHEM, V3, P751, DOI [10.4155/FMC.11.15, 10.4155/fmc.11.15]
[48]   Exploring the Chemical Space of Known and Unknown Organic Small Molecules at www.gdb.unibe.ch [J].
Reymond, Jean-Louis ;
Blum, Lorenz C. ;
van Deursen, Ruud .
CHIMIA, 2011, 65 (11) :863-867
[49]   Chemical space as a source for new drugs [J].
Reymond, Jean-Louis ;
van Deursen, Ruud ;
Blum, Lorenz C. ;
Ruddigkeit, Lars .
MEDCHEMCOMM, 2010, 1 (01) :30-38
[50]   Reactive compounds and in vitro false positives in HTS [J].
Rishton, GM .
DRUG DISCOVERY TODAY, 1997, 2 (09) :382-384