SCARF: maximizing next-generation EST assemblies for evolutionary and population genomic analyses

被引：9

作者：

Barker, Michael S. ^{[1
,2
,3
]}

Dlugosch, Katrina M. ^{[1
]}

Reddy, A. Chaitanya C. ^{[1
]}

Amyotte, Sarah N. ^{[1
]}

Rieseberg, Loren H. ^{[1
,2
,3
]}

机构：

[1] Univ British Columbia, Dept Bot, Vancouver, BC V6T 1Z4, Canada

[2] Indiana Univ, Dept Biol, Bloomington, IN 47405 USA

[3] Indiana Univ, Ctr Genom & Bioinformat, Bloomington, IN 47405 USA

来源：

BIOINFORMATICS | 2009年 / 25卷 / 04期

基金：

美国国家科学基金会; 加拿大自然科学与工程研究理事会;

关键词：

D O I：

10.1093/bioinformatics/btp011

中图分类号：

Q5 [生物化学];

学科分类号：

071010 ; 081704 ;

摘要：

Scaffolded and Corrected Assembly of Roche 454 (SCARF) is a next-generation sequence assembly tool for evolutionary genomics that is designed especially for assembling 454 EST sequences against high-quality reference sequences from related species. The program was created to knit together low-coverage 454 contigs that do not assemble during traditional de novo assembly, using a reference sequence library to orient the 454 sequences.

引用

页码：535 / 536

页数：2

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