Higher-order cellular information processing with synthetic RNA devices

被引:401
作者
Win, Maung Nyan [1 ]
Smolke, Christina D. [1 ]
机构
[1] CALTECH, Div Chem & Chem Engn, Pasadena, CA 91125 USA
关键词
D O I
10.1126/science.1160311
中图分类号
O [数理科学和化学]; P [天文学、地球科学]; Q [生物科学]; N [自然科学总论];
学科分类号
07 ; 0710 ; 09 ;
摘要
The engineering of biological systems is anticipated to provide effective solutions to challenges that include energy and food production, environmental quality, and health and medicine. Our ability to transmit information to and from living systems, and to process and act on information inside cells, is critical to advancing the scale and complexity at which we can engineer, manipulate, and probe biological systems. We developed a general approach for assembling RNA devices that can execute higher-order cellular information processing operations from standard components. The engineered devices can function as logic gates (AND, NOR, NAND, or OR gates) and signal filters, and exhibit cooperativity. RNA devices process and transmit molecular inputs to targeted protein outputs, linking computation to gene expression and thus the potential to control cellular function.
引用
收藏
页码:456 / 460
页数:5
相关论文
共 25 条
[1]   Environmental signal integration by a modular AND gate [J].
Anderson, J. Christopher ;
Voigt, Christopher A. ;
Arkin, Adam P. .
MOLECULAR SYSTEMS BIOLOGY, 2007, 3
[2]   An autonomous molecular computer for logical control of gene expression [J].
Benenson, Y ;
Gil, B ;
Ben-Dor, U ;
Adar, R ;
Shapiro, E .
NATURE, 2004, 429 (6990) :423-429
[3]   Engineered allosteric ribozymes as biosensor components [J].
Breaker, RR .
CURRENT OPINION IN BIOTECHNOLOGY, 2002, 13 (01) :31-39
[4]   Endogenous microRNA can be broadly exploited to regulate transgene expression according to tissue, lineage and differentiation state [J].
Brown, Brian D. ;
Gentner, Bernhard ;
Cantore, Alessio ;
Colleoni, Silvia ;
Amendola, Mario ;
Zingale, Anna ;
Baccarini, Alessia ;
Lazzari, Giovanna ;
Galli, Cesare ;
Naldini, Luigi .
NATURE BIOTECHNOLOGY, 2007, 25 (12) :1457-1467
[5]   Programming gene expression with combinatorial promoters [J].
Cox, Robert Sidney, III ;
Surette, Michael G. ;
Elowitz, Michael B. .
MOLECULAR SYSTEMS BIOLOGY, 2007, 3 (1)
[6]   Triggered amplification by hybridization chain reaction [J].
Dirks, RM ;
Pierce, NA .
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 2004, 101 (43) :15275-15278
[7]   Combinatorial synthesis of genetic networks [J].
Guet, CC ;
Elowitz, MB ;
Hsing, WH ;
Leibler, S .
SCIENCE, 2002, 296 (5572) :1466-1470
[8]   Biochemistry - Adaptive recognition by nucleic acid aptamers [J].
Hermann, T ;
Patel, DJ .
SCIENCE, 2000, 287 (5454) :820-825
[9]   RNA synthetic biology [J].
Isaacs, FJ ;
Dwyer, DJ ;
Collins, JJ .
NATURE BIOTECHNOLOGY, 2006, 24 (05) :545-554
[10]   Sequence elements outside the hammerhead ribozyme catalytic core enable intracellular activity [J].
Khvorova, A ;
Lescoute, A ;
Westhof, E ;
Jayasena, SD .
NATURE STRUCTURAL BIOLOGY, 2003, 10 (09) :708-712