miR2Disease: a manually curated database for microRNA deregulation in human disease

被引:1112
作者
Jiang, Qinghua [1 ]
Wang, Yadong [1 ,2 ]
Hao, Yangyang [1 ]
Juan, Liran [1 ]
Teng, Mingxiang [1 ]
Zhang, Xinjun [1 ]
Li, Meimei [1 ]
Wang, Guohua [1 ,2 ,3 ]
Liu, Yunlong [2 ,3 ,4 ]
机构
[1] Harbin Inst Technol, Sch Comp Sci & Technol, Ctr Biomed Informat, Harbin 150001, Heilongjiang, Peoples R China
[2] Indiana Univ, Sch Med, Ctr Computat Biol & Bioinformat, Indianapolis, IN 46202 USA
[3] Indiana Univ, Sch Med, Dept Med, Div Biostat, Indianapolis, IN 46202 USA
[4] Indiana Univ, Sch Med, Ctr Med Genom, Indianapolis, IN 46202 USA
基金
中国国家自然科学基金;
关键词
LUNG-CANCER; REGULATED MICRORNA; DOWN-REGULATION; TUMOR INVASION; BREAST-CANCER; EXPRESSION; MIRNAS; GENE; TARGETS; METASTASIS;
D O I
10.1093/nar/gkn714
中图分类号
Q5 [生物化学]; Q7 [分子生物学];
学科分类号
071010 ; 081704 ;
摘要
'miR2Disease', a manually curated database, aims at providing a comprehensive resource of microRNA deregulation in various human diseases. The current version of miR2Disease documents 1939 curated relationships between 299 human microRNAs and 94 human diseases by reviewing more than 600 published papers. Around one-seventh of the microRNA-disease relationships represent the pathogenic roles of deregulated microRNA in human disease. Each entry in the miR2Disease contains detailed information on a microRNA disease relationship, including a microRNA ID, the disease name, a brief description of the microRNA-disease relationship, an expression pattern of the microRNA, the detection method for microRNA expression, experimentally verified target gene(s) of the microRNA and a literature reference. miR2Disease provides a user-friendly interface for a convenient retrieval of each entry by microRNA ID, disease name, or target gene. In addition, miR2Disease offers a submission page that allows researchers to submit established microRNA disease relationships that are not documented. Once approved by the submission review committee, the submitted records will be included in the database. miR2Disease is freely available at http://www.miR2Disease.org.
引用
收藏
页码:D98 / D104
页数:7
相关论文
共 53 条
[11]   Truncation in CCND1 mRNA alters miR-16-1 regulation in mantle cell lymphoma [J].
Chen, Robert W. ;
Bemis, Lynne T. ;
Amato, Carol M. ;
Myint, Han ;
Tran, Hung ;
Birks, Diane K. ;
Eckhardt, S. Gail ;
Robinson, William A. .
BLOOD, 2008, 112 (03) :822-829
[12]   Antisense inhibition of human miRNAs and indications for an involvement of miRNA in cell growth and apoptosis [J].
Cheng, AM ;
Byrom, MW ;
Shelton, J ;
Ford, LP .
NUCLEIC ACIDS RESEARCH, 2005, 33 (04) :1290-1297
[13]   OncomiRs: the discovery and progress of microRNAs in cancers [J].
Cho, William C. S. .
MOLECULAR CANCER, 2007, 6 (1)
[14]   miR-15 and miR-16 induce apoptosis by targeting BCL2 [J].
Cimmino, A ;
Calin, GA ;
Fabbri, M ;
Iorio, MV ;
Ferracin, M ;
Shimizu, M ;
Wojcik, SE ;
Aqeilan, RI ;
Zupo, S ;
Dono, M ;
Rassenti, L ;
Alder, H ;
Volinia, S ;
Liu, CG ;
Kipps, TJ ;
Negrini, M ;
Croce, CM .
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 2005, 102 (39) :13944-13949
[15]   Oncomirs - microRNAs with a role in cancer [J].
Esquela-Kerscher, A ;
Slack, FJ .
NATURE REVIEWS CANCER, 2006, 6 (04) :259-269
[16]   The let-7 microRNA reduces tumor growth in mouse models of lung cancer [J].
Esquela-Kerscher, Aurora ;
Trang, Phong ;
Wiggins, Jason F. ;
Patrawala, Lubna ;
Cheng, Angie ;
Ford, Lance ;
Weidhaas, Joanne B. ;
Brown, David ;
Bader, Andreas G. ;
Slack, Frank J. .
CELL CYCLE, 2008, 7 (06) :759-764
[17]   Towards the human cancer epigenome - A first draft of histone modifications [J].
Fraga, MF ;
Esteller, M .
CELL CYCLE, 2005, 4 (10) :1377-1381
[18]   The microRNA Registry [J].
Griffiths-Jones, S .
NUCLEIC ACIDS RESEARCH, 2004, 32 :D109-D111
[19]   miRBase: tools for microRNA genomics [J].
Griffiths-Jones, Sam ;
Saini, Harpreet Kaur ;
van Dongen, Stijn ;
Enright, Anton J. .
NUCLEIC ACIDS RESEARCH, 2008, 36 :D154-D158
[20]   A microRNA polycistron as a potential human oncogene [J].
He, L ;
Thomson, JM ;
Hemann, MT ;
Hernando-Monge, E ;
Mu, D ;
Goodson, S ;
Powers, S ;
Cordon-Cardo, C ;
Lowe, SW ;
Hannon, GJ ;
Hammond, SM .
NATURE, 2005, 435 (7043) :828-833