Genome sequencing in clinical microbiology

被引：35

作者：

Chan, Jacqueline Z-M ^{[1
]}

Pallen, Mark J. ^{[1
,2
]}

Oppenheim, Beryl ^{[1
,2
]}

Constantinidou, Chrystala ^{[1
,2
]}

机构：

[1] Univ Birmingham, Inst Microbiol & Infect, Birmingham B15 2TT, W Midlands, England

[2] Queen Elizabeth Hosp, NIHR Surg Reconstruct & Microbiol Res Ctr, Birmingham B15 2TH, W Midlands, England

来源：

NATURE BIOTECHNOLOGY | 2012年 / 30卷 / 11期

基金：

英国医学研究理事会;

关键词：

OUTBREAK; TRANSMISSION; EVOLUTION; RESISTANCE; DISEASE; CULTURE; HEALTH; STRAIN; WOUNDS; MRSA;

D O I：

10.1038/nbt.2410

中图分类号：

Q81 [生物工程学（生物技术）]; Q93 [微生物学];

学科分类号：

071005 ; 0836 ; 090102 ; 100705 ;

摘要：

[No abstract available]

引用

页码：1068 / 1071

页数：4

共 43 条

[1] A new technique for obtaining whole pathogen transcriptomes from infected host tissues [J].

Azhikina, Tatyana L. ;

Skvortsov, Timofey A. ;

Radaeva, Tatyana V. ;

Mardanov, Andrey V. ;

Ravin, Nikolay V. ;

Apt, Alexander S. ;

Sverdlov, Eugene D. .

BIOTECHNIQUES, 2010, 48 (02) :139-144

[2] Combined high-resolution genotyping and geospatial analysis reveals modes of endemic urban typhoid fever transmission [J].

Baker, Stephen ;

Holt, Kathryn E. ;

Clements, Archie C. A. ;

Karkey, Abhilasha ;

Arjyal, Amit ;

Boni, Maciej F. ;

Dongol, Sabina ;

Hammond, Naomi ;

Koirala, Samir ;

Pham Thanh Duy ;

Tran Vu Thieu Nga ;

Campbell, James I. ;

Dolecek, Christiane ;

Basnyat, Buddha ;

Dougan, Gordon ;

Farrar, Jeremy J. .

OPEN BIOLOGY, 2011, 1

[3] A hybrid approach for the automated finishing of bacterial genomes [J].

Bashir, Ali ;

Klammer, Aaron A. ;

Robins, William P. ;

Chin, Chen-Shan ;

Webster, Dale ;

Paxinos, Ellen ;

Hsu, David ;

Ashby, Meredith ;

Wang, Susana ;

Peluso, Paul ;

Sebra, Robert ;

Sorenson, Jon ;

Bullard, James ;

Yen, Jackie ;

Valdovino, Marie ;

Mollova, Emilia ;

Luong, Khai ;

Lin, Steven ;

Lamay, Brianna ;

Joshi, Amruta ;

Rowe, Lori ;

Frace, Michael ;

Tarr, Cheryl L. ;

Turnsek, Maryann ;

Davis, Brigid M. ;

Kasarskis, Andrew ;

Mekalanos, John J. ;

Waldor, Matthew K. ;

Schadt, Eric E. .

NATURE BIOTECHNOLOGY, 2012, 30 (07) :701-+

[4] The Origin of the Haitian Cholera Outbreak Strain. [J].

Chin, Chen-Shan ;

Sorenson, Jon ;

Harris, Jason B. ;

Robins, William P. ;

Charles, Richelle C. ;

Jean-Charles, Roger R. ;

Bullard, James ;

Webster, Dale R. ;

Kasarskis, Andrew ;

Peluso, Paul ;

Paxinos, Ellen E. ;

Yamaichi, Yoshiharu ;

Calderwood, Stephen B. ;

Mekalanos, John J. ;

Schadt, Eric E. ;

Waldor, Matthew K. .

NEW ENGLAND JOURNAL OF MEDICINE, 2011, 364 (01) :33-42

[5] APPLICATIONS OF NEXT-GENERATION SEQUENCING The human microbiome: at the interface of health and disease [J].

Cho, Ilseung ;

Blaser, Martin J. .

NATURE REVIEWS GENETICS, 2012, 13 (04) :260-270

[6] Rapid Pneumococcal Evolution in Response to Clinical Interventions [J].

Croucher, Nicholas J. ;

Harris, Simon R. ;

Fraser, Christophe ;

Quail, Michael A. ;

Burton, John ;

van der Linden, Mark ;

McGee, Lesley ;

von Gottberg, Anne ;

Song, Jae Hoon ;

Ko, Kwan Soo ;

Pichon, Bruno ;

Baker, Stephen ;

Parry, Christopher M. ;

Lambertsen, Lotte M. ;

Shahinas, Dea ;

Pillai, Dylan R. ;

Mitchell, Timothy J. ;

Dougan, Gordon ;

Tomasz, Alexander ;

Klugman, Keith P. ;

Parkhill, Julian ;

Hanage, William P. ;

Bentley, Stephen D. .

SCIENCE, 2011, 331 (6016) :430-434

[7] Human Microbiota-Secreted Factors Inhibit Shiga Toxin Synthesis by Enterohemorrhagic Escherichia coli O157:H7 [J].

de Sablet, Thibaut ;

Chassard, Christophe ;

Bernalier-Donadille, Annick ;

Vareille, Marjolaine ;

Gobert, Alain P. ;

Martin, Christine .

INFECTION AND IMMUNITY, 2009, 77 (02) :783-790

[8] A pilot study of rapid benchtop sequencing of Staphylococcus aureus and Clostridium difficile for outbreak detection and surveillance [J].

Eyre, David W. ;

Golubchik, Tanya ;

Gordon, N. Claire ;

Bowden, Rory ;

Piazza, Paolo ;

Batty, Elizabeth M. ;

Ip, Camilla L. C. ;

Wilson, Daniel J. ;

Didelot, Xavier ;

O'Connor, Lily ;

Lay, Rochelle ;

Buck, David ;

Kearns, Angela M. ;

Shaw, Angela ;

Paul, John ;

Wilcox, Mark H. ;

Donnelly, Peter J. ;

Peto, Tim E. A. ;

Walker, A. Sarah ;

Crook, Derrick W. .

BMJ OPEN, 2012, 2 (03)

[9] Genome sequencing of linezolid-resistant Streptococcus pneumoniae mutants reveals novel mechanisms of resistance [J].

Feng, Jie ;

Lupien, Andreanne ;

Gingras, Helene ;

Wasserscheid, Jessica ;

Dewar, Ken ;

Legare, Danielle ;

Ouellette, Marc .

GENOME RESEARCH, 2009, 19 (07) :1214-1223

[10] Prospects for the Future Using Genomics and Proteomics in Clinical Microbiology [J].

Fournier, Pierre-Edouard ;

Raoult, Didier .

ANNUAL REVIEW OF MICROBIOLOGY, VOL 65, 2011, 65 :169-+

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