PlasmoDB: a functional genomic database for malaria parasites

被引：855

作者：

Aurrecoechea, Cristina ^{[2
]}

Brestelli, John ^{[1
]}

Brunk, Brian P. ^{[1
]}

Dommer, Jennifer ^{[1
]}

Fischer, Steve ^{[1
]}

Gajria, Bindu ^{[1
]}

Gao, Xin ^{[1
]}

Gingle, Alan ^{[3
]}

Grant, Greg ^{[4
]}

Harb, Omar S. ^{[1
]}

Heiges, Mark ^{[2
]}

Innamorato, Frank ^{[1
]}

Iodice, John ^{[1
]}

Kissinger, Jessica C. ^{[2
,5
]}

Kraemer, Eileen

Li, Wei ^{[1
]}

Miller, John A. ^{[6
]}

Nayak, Vishal ^{[1
]}

Pennington, Cary ^{[2
]}

Pinney, Deborah F. ^{[1
]}

Roos, David S. ^{[7
]}

Ross, Chris ^{[2
]}

Stoeckert, Christian J., Jr. ^{[1
]}

Treatman, Charles ^{[1
]}

Wang, Haiming ^{[2
]}

机构：

[1] Univ Penn, Penn Ctr Bioinformat, Philadelphia, PA 19104 USA

[2] Univ Georgia, Ctr Trop & Emerging Global Dis, Athens, GA 30602 USA

[3] Univ Georgia, Ctr Appl Genet Technol, Athens, GA 30602 USA

[4] Univ Penn, Sch Med, Philadelphia, PA 19104 USA

[5] Univ Georgia, Dept Genet, Athens, GA 30602 USA

[6] Univ Georgia, Dept Comp Sci, Athens, GA 30602 USA

[7] Univ Penn, Dept Biol, Philadelphia, PA 19104 USA

来源：

NUCLEIC ACIDS RESEARCH | 2009年 / 37卷

基金：

美国国家卫生研究院;

关键词：

ANTISENSE TRANSCRIPTS; GENE-EXPRESSION; PROTEINS; REVEALS; VIRULENCE; SIGNAL; PATHWAYS; PROGRESS; SURFACE; MAP;

D O I：

10.1093/nar/gkn814

中图分类号：

Q5 [生物化学]; Q7 [分子生物学];

学科分类号：

071010 ; 081704 ;

摘要：

PlasmoDB (http://PlasmoDB.org) is a functional genomic database for Plasmodium spp. that provides a resource for data analysis and visualization in a gene-by-gene or genome-wide scale. PlasmoDB belongs to a family of genomic resources that are housed under the EuPathDB (http://EuPathDB.org) Bioinformatics Resource Center (BRC) umbrella. The latest release, PlasmoDB 5.5, contains numerous new data types from several broad categories-annotated genomes, evidence of transcription, proteomics evidence, protein function evidence, population biology and evolution. Data in PlasmoDB can be queried by selecting the data of interest from a query grid or drop down menus. Various results can then be combined with each other on the query history page. Search results can be downloaded with associated functional data and registered users can store their query history for future retrieval or analysis.

引用

页码：D539 / D543

页数：5

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