Physical Constraints on Biological Integral Control Design for Homeostasis and Sensory Adaptation

被引:68
作者
Ang, Jordan
McMillen, David R. [1 ]
机构
[1] Univ Toronto, Dept Chem & Phys Sci, Mississauga, ON L5L 1C6, Canada
基金
加拿大创新基金会; 加拿大自然科学与工程研究理事会;
关键词
ROBUST PERFECT ADAPTATION; DIRECTED EVOLUTION; ESCHERICHIA-COLI; GENE-EXPRESSION; MODEL; PROTEINS; NETWORK; RNAI; RIBOREGULATORS; DEGRADATION;
D O I
10.1016/j.bpj.2012.12.015
中图分类号
Q6 [生物物理学];
学科分类号
071011 [生物物理学];
摘要
Synthetic biology includes an effort to use design-based approaches to create novel controllers, biological systems aimed at regulating the output of other biological processes. The design of such controllers can be guided by results from control theory, including the strategy of integral feedback control, which is central to regulation, sensory adaptation, and long-term robustness. Realization of integral control in a synthetic network is an attractive prospect, but the nature of biochemical networks can make the implementation of even basic control structures challenging. Here we present a study of the general challenges and important constraints that will arise in efforts to engineer biological integral feedback controllers or to analyze existing natural systems. Constraints arise from the need to identify target output values that the combined process-plus-controller system can reach, and to ensure that the controller implements a good approximation of integral feedback control. These constraints depend on mild assumptions about the shape of input-output relationships in the biological components, and thus will apply to a variety of biochemical systems. We summarize our results as a set of variable constraints intended to provide guidance for the design or analysis of a working biological integral feedback controller.
引用
收藏
页码:505 / 515
页数:11
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