The Mouse Genome Database: Genotypes, Phenotypes, and Models of Human Disease

被引:45
作者
Bult, Carol J. [1 ]
Eppig, Janan T. [1 ]
Blake, Judith A. [1 ]
Kadin, James A. [1 ]
Richardson, Joel E. [1 ]
机构
[1] Jackson Lab, Bar Harbor, ME 04609 USA
基金
美国国家卫生研究院;
关键词
MAMMALIAN GENE-FUNCTION; RESOURCE; MICRORNAS; NCBI; MGD;
D O I
10.1093/nar/gks1115
中图分类号
Q5 [生物化学]; Q7 [分子生物学];
学科分类号
071010 ; 081704 ;
摘要
The laboratory mouse is the premier animal model for studying human biology because all life stages can be accessed experimentally, a completely sequenced reference genome is publicly available and there exists a myriad of genomic tools for comparative and experimental research. In the current era of genome scale, data-driven biomedical research, the integration of genetic, genomic and biological data are essential for realizing the full potential of the mouse as an experimental model. The Mouse Genome Database (MGD; http://www.informatics.jax.org), the community model organism database for the laboratory mouse, is designed to facilitate the use of the laboratory mouse as a model system for understanding human biology and disease. To achieve this goal, MGD integrates genetic and genomic data related to the functional and phenotypic characterization of mouse genes and alleles and serves as a comprehensive catalog for mouse models of human disease. Recent enhancements to MGD include the addition of human ortholog details to mouse Gene Detail pages, the inclusion of microRNA knockouts to MGD's catalog of alleles and phenotypes, the addition of video clips to phenotype images, providing access to genotype and phenotype data associated with quantitative trait loci (QTL) and improvements to the layout and display of Gene Ontology annotations.
引用
收藏
页码:D885 / D891
页数:7
相关论文
共 21 条
  • [1] A New Face and New Challenges for Online Mendelian Inheritance in Man (OMIM®)
    Amberger, Joanna
    Bocchini, Carol
    Hamosh, Ada
    [J]. HUMAN MUTATION, 2011, 32 (05) : 564 - 567
  • [2] Gene Ontology: tool for the unification of biology
    Ashburner, M
    Ball, CA
    Blake, JA
    Botstein, D
    Butler, H
    Cherry, JM
    Davis, AP
    Dolinski, K
    Dwight, SS
    Eppig, JT
    Harris, MA
    Hill, DP
    Issel-Tarver, L
    Kasarskis, A
    Lewis, S
    Matese, JC
    Richardson, JE
    Ringwald, M
    Rubin, GM
    Sherlock, G
    [J]. NATURE GENETICS, 2000, 25 (01) : 25 - 29
  • [3] The Mouse Tumor Biology Database (MTB): A Central Electronic Resource for Locating and Integrating Mouse Tumor Pathology Data
    Begley, D. A.
    Krupke, D. M.
    Neuhauser, S. B.
    Richardson, J. E.
    Bult, C. J.
    Eppig, J. T.
    Sundberg, J. P.
    [J]. VETERINARY PATHOLOGY, 2012, 49 (01) : 218 - 223
  • [4] The Gene Ontology: enhancements for 2011
    Blake, J. A.
    Dolan, M.
    Drabkin, H.
    Hill, D. P.
    Ni, L.
    Sitnikov, D.
    Burgess, S.
    Buza, T.
    Gresham, C.
    McCarthy, F.
    Pillai, L.
    Wang, H.
    Carbon, S.
    Lewis, S. E.
    Mungall, C. J.
    Gaudet, P.
    Chisholm, R. L.
    Fey, P.
    Kibbe, W. A.
    Basu, S.
    Siegele, D. A.
    McIntosh, B. K.
    Renfro, D. P.
    Zweifel, A. E.
    Hu, J. C.
    Brown, N. H.
    Tweedie, S.
    Alam-Faruque, Y.
    Apweiler, R.
    Auchinchloss, A.
    Axelsen, K.
    Argoud-Puy, G.
    Bely, B.
    Blatter, M. -C.
    Bougueleret, L.
    Boutet, E.
    Branconi-Quintaje, S.
    Breuza, L.
    Bridge, A.
    Browne, P.
    Chan, W. M.
    Coudert, E.
    Cusin, I.
    Dimmer, E.
    Duek-Roggli, P.
    Eberhardt, R.
    Estreicher, A.
    Famiglietti, L.
    Ferro-Rojas, S.
    Feuermann, M.
    [J]. NUCLEIC ACIDS RESEARCH, 2012, 40 (D1) : D559 - D564
  • [5] Blake J. A., 2008, CURR PROTOC BIOINFOR, DOI [10.1002/0471250953.bi0702s23, DOI 10.1002/0471250953.BI0702S23]
  • [6] The mammalian gene function resource: the international knockout mouse consortium
    Bradley, Allan
    Anastassiadis, Konstantinos
    Ayadi, Abdelkader
    Battey, James F.
    Bell, Cindy
    Birling, Marie-Christine
    Bottomley, Joanna
    Brown, Steve D.
    Buerger, Antje
    Bult, Carol J.
    Bushell, Wendy
    Collins, Francis S.
    Desaintes, Christian
    Doe, Brendan
    Economides, Aris
    Eppig, Janan T.
    Finnell, Richard H.
    Fletcher, Colin
    Fray, Martin
    Frendewey, David
    Friedel, Roland H.
    Grosveld, Frank G.
    Hansen, Jens
    Herault, Yann
    Hicks, Geoffrey
    Hoerlein, Andreas
    Houghton, Richard
    de Angelis, Martin Hrabe
    Huylebroeck, Danny
    Iyer, Vivek
    de Jong, Pieter J.
    Kadin, James A.
    Kaloff, Cornelia
    Kennedy, Karen
    Koutsourakis, Manousos
    Lloyd, K. C. Kent
    Marschall, Susan
    Mason, Jeremy
    McKerlie, Colin
    McLeod, Michael P.
    von Melchner, Harald
    Moore, Mark
    Mujica, Alejandro O.
    Nagy, Andras
    Nefedov, Mikhail
    Nutter, Lauryl M.
    Pavlovic, Guillaume
    Peterson, Jane L.
    Pollock, Jonathan
    Ramirez-Solis, Ramiro
    [J]. MAMMALIAN GENOME, 2012, 23 (9-10) : 580 - 586
  • [7] Towards an encyclopaedia of mammalian gene function: the International Mouse Phenotyping Consortium
    Brown, Steve D. M.
    Moore, Mark W.
    [J]. DISEASE MODELS & MECHANISMS, 2012, 5 (03) : 289 - 292
  • [8] The Mouse Genome Database (MGD): mouse biology and model systems
    Bult, Carol J.
    Eppig, Janan T.
    Kadin, James A.
    Richardson, Joel E.
    Blake, Judith A.
    [J]. NUCLEIC ACIDS RESEARCH, 2008, 36 : D724 - D728
  • [9] The Mouse Genome Database: enhancements and updates
    Bult, Carol J.
    Kadin, James A.
    Richardson, Joel E.
    Blake, Judith A.
    Eppig, Janan T.
    [J]. NUCLEIC ACIDS RESEARCH, 2010, 38 : D586 - D592
  • [10] The diversity outbred mouse population
    Churchill, Gary A.
    Gatti, Daniel M.
    Munger, Steven C.
    Svenson, Karen L.
    [J]. MAMMALIAN GENOME, 2012, 23 (9-10) : 713 - 718