Potential energy functions for threading

被引:112
作者
Jones, DT [1 ]
Thornton, JM [1 ]
机构
[1] UNIV LONDON UNIV COLL, BIOMOLEC STRUCT & MODELLING UNIT, LONDON WC1E 6BT, ENGLAND
关键词
D O I
10.1016/S0959-440X(96)80076-5
中图分类号
Q5 [生物化学]; Q7 [分子生物学];
学科分类号
071010 ; 081704 ;
摘要
Despite little progress in ab initio solutions to the problem of predicting a protein's tertiary structure, over the past four years or so the development of fold-recognition methods for tertiary structure prediction has been the source of some encouragement in this difficult field. Despite promising initial results, these methods are clearly not yet fully mature and many groups are now working on different aspects of the methods involved in the hope of increasing the reliability and sensitivity of these tools.
引用
收藏
页码:210 / 216
页数:7
相关论文
共 40 条
[21]   CONTACT POTENTIAL THAT RECOGNIZES THE CORRECT FOLDING OF GLOBULAR-PROTEINS [J].
MAIOROV, VN ;
CRIPPEN, GM .
JOURNAL OF MOLECULAR BIOLOGY, 1992, 227 (03) :876-888
[22]  
MATUSO Y, 1995, J BIOCHEM-TOKYO, V118, P137
[23]   ESTIMATION OF EFFECTIVE INTERRESIDUE CONTACT ENERGIES FROM PROTEIN CRYSTAL-STRUCTURES - QUASI-CHEMICAL APPROXIMATION [J].
MIYAZAWA, S ;
JERNIGAN, RL .
MACROMOLECULES, 1985, 18 (03) :534-552
[24]   DEVELOPMENT OF PSEUDOENERGY POTENTIALS FOR ASSESSING PROTEIN 3-D-1-D COMPATIBILITY AND DETECTING WEAK HOMOLOGIES [J].
NISHIKAWA, K ;
MATSUO, Y .
PROTEIN ENGINEERING, 1993, 6 (08) :811-820
[25]   CRITERIA THAT DISCRIMINATE BETWEEN NATIVE PROTEINS AND INCORRECTLY FOLDED MODELS [J].
NOVOTNY, J ;
RASHIN, AA ;
BRUCCOLERI, RE .
PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS, 1988, 4 (01) :19-30
[26]   AN ANALYSIS OF INCORRECTLY FOLDED PROTEIN MODELS - IMPLICATIONS FOR STRUCTURE PREDICTIONS [J].
NOVOTNY, J ;
BRUCCOLERI, R ;
KARPLUS, M .
JOURNAL OF MOLECULAR BIOLOGY, 1984, 177 (04) :787-818
[27]   PROTEIN SUPERFAMILIES AND DOMAIN SUPERFOLDS [J].
ORENGO, CA ;
JONES, DT ;
THORNTON, JM .
NATURE, 1994, 372 (6507) :631-634
[28]   PREDICTION OF PROTEIN-STRUCTURE BY EVALUATION OF SEQUENCE-STRUCTURE FITNESS - ALIGNING SEQUENCES TO CONTACT PROFILES DERIVED FROM 3-DIMENSIONAL STRUCTURES [J].
OUZOUNIS, C ;
SANDER, C ;
SCHARF, M ;
SCHNEIDER, R .
JOURNAL OF MOLECULAR BIOLOGY, 1993, 232 (03) :805-825
[29]  
OVERINGTON J, 1992, PROTEIN SCI, V1, P216
[30]   AB-INITIO STRUCTURE PREDICTION FOR SMALL POLYPEPTIDES AND PROTEIN-FRAGMENTS USING GENETIC ALGORITHMS [J].
PEDERSEN, JT ;
MOULT, J .
PROTEINS-STRUCTURE FUNCTION AND GENETICS, 1995, 23 (03) :454-460